RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RAP2BP61225 183 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ARSIQ5FYB1 569 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM244Q5VVB8 128 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM198Q66K66 360 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 GPR139Q6DWJ6 353 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NXPE4Q6UWF7 544 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ERN2Q76MJ5 926 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NUP43Q8NFH3 380 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 OR1J4Q8NGS1 313 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 OR6N2Q8NGY6 317 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 GRHL3Q8TE85 626 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ASB13Q8WXK3 278 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DDX1Q92499 740 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DDIT4LQ96D03 193 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 RRNAD1Q96FB5 475 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 LMF2Q9BU23 707 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 FGFBP2Q9BYJ0 223 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 PPA2Q9H2U2 334 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SLCO5A1Q9H2Y9 848 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM165Q9HC07 324 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SLC22A11Q9NSA0 550 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM100Q9NV29 134 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NKX1-2Q9UD57 310 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 RNF212BA8MTL3 300 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 WASH4PA8MWX3 477 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NARSO43776 548 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NDUFB2O95178 105 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SCGB1D2O95969 90 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ACP5P13686 325 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CELP19835 753 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 PRSS3P35030 304 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 GCGRP47871 477 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DAP3P51398 398 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TBCEQ15813 527 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF792Q3KQV3 632 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 AMZ1Q400G9 498 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CLEC12AQ5QGZ9 265 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 POMZP3Q6PJE2 187 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ASRGL1Q7L266 308 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DCP2Q8IU60 420 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CLIP4Q8N3C7 705 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 OR5H2Q8NGV7 314 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 OR52P1PQ8NH57 321 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 C8orf33Q9H7E9 229 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CCSER2Q9H7U1 834 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SRA1Q9HD15 236 aaKnown RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 PDE7BQ9NP56 450 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 BIN3Q9NQY0 253 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SDR39U1Q9NRG7 319 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SDHAF2Q9NX18 166 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 HSFX1Q9UBD0 423 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ENPP5Q9UJA9 477 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ADAM29Q9UKF5 820 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SLC35A3Q9Y2D2 325 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM98Q9Y2Y6 226 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ANKRD33BA6NCL7 494 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 OR6C74A6NCV1 312 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TP73O15350 636 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 LYRM1O43325 122 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 F2P00734 622 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ADRB3P13945 408 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NFYAP23511 347 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CAMLGP49069 296 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DGKQP52824 942 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SLC26A5P58743 744 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 DCAF7P61962 342 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM115Q12893 351 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF460Q14592 562 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 UNC50Q53HI1 259 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 NAPRTQ6XQN6 538 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 RNF111Q6ZNA4 994 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CIR1Q86X95 450 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-203ENST00000409050 PHTF2Q8N3S3 785 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 CDRT4Q8N9R6 151 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SYT14Q8NB59 555 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF516Q92618 1163 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 MAL2Q969L2 176 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 SLC12A9Q9BXP2 914 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 PCDHA9Q9Y5H5 950 aa5.83□□□□□ -1.48
SCN1A-203ENST00000409050 VSTM2BA6NLU5 285 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 KRBOX1C9JBD0 128 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 F5H5P2 479 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 UBFD1O14562 309 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 AURKAO14965 403 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PRAMEF2O60811 474 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SIX3O95343 332 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 HBE1P02100 147 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 AKAIN1P0CW23 69 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CD9P21926 228 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RAB5CP51148 216 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TAS2R38P59533 333 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TAP2Q03519 686 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RBM39Q14498 530 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 MICAQ29983 383 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 POM121L1PQ3SYA9 428 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TREML2Q5T2D2 321 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 FAM83HQ6ZRV2 1179 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 KCTD9Q7L273 389 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TXNDC5Q8NBS9 432 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SIMC1Q8NDZ2 872 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms