RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PIPP12273 146 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 IGFALSP35858 605 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 DOC2BQ14184 412 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 UAP1L1Q3KQV9 507 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 ZNF776Q68DI1 518 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 ABHD17CQ6PCB6 329 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 CASP12Q6UXS9 341 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 WDR53Q7Z5U6 358 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 CCDC116Q8IYX3 515 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 OR2L3Q8NG85 312 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 CNRIP1Q96F85 164 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-202ENST00000352886 CDADC1Q9BWV3 514 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 SLC17A9Q9BYT1 436 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 SPHK1Q9NYA1 384 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 FBXW2Q9UKT8 454 aa20.56■□□□□ 0.88
SHMT1-202ENST00000352886 PRICKLE3O43900 615 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 NME6O75414 186 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 HMGN2P05204 90 aaKnown RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 CHRM4P08173 479 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 CD40LGP29965 261 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 GDI1P31150 447 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 MAT2AP31153 395 aaKnown RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 ERVK-21P61565 698 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 DUSP2Q05923 314 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 FUT5Q11128 374 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 TOR1AIP1Q5JTV8 583 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 C12orf73Q69YU5 71 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 KIAA1211LQ6NV74 962 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 PODNL1Q6PEZ8 512 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 MINDY2Q8NBR6 621 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 SUN3Q8TAQ9 357 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 Q96MT0 163 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 MKRN2Q9H000 416 aaKnown RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 RMI1Q9H9A7 625 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 KLHL20Q9Y2M5 609 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 C8orf89P0DMQ9 161 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 ATP5A1P25705 553 aaKnown RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 PEBP1P30086 187 aaKnown RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 CBX3Q13185 183 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 PLEKHG7Q6ZR37 379 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 BBS10Q8TAM1 723 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 JPH3Q8WXH2 748 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-202ENST00000352886 FNDC11Q9BVV2 318 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 SLC9A8Q9Y2E8 581 aa20.55■□□□□ 0.88
SHMT1-202ENST00000352886 A0A1W2PRQ8 180 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 A0A1W2PS29 197 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 AGAP5A6NIR3 686 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 PRR19A6NJB7 356 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 AIFM1O95831 613 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 EPPINO95925 133 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 TNNI3P19429 210 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 CERS1P27544 350 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 C18orf63Q68DL7 685 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 MRM1Q6IN84 353 aaKnown RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 TMEM64Q6YI46 380 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 UBE2Q1Q7Z7E8 422 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 CLIP4Q8N3C7 705 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 OR2L5Q8NG80 312 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 OR6T1Q8NGN1 323 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 SLC6A17Q9H1V8 727 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 SYNPO2LQ9H987 977 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 POLE4Q9NR33 117 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 CCDC59Q9P031 241 aaKnown RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 A3GALT2U3KPV4 340 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 CCRL2O00421 344 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 EN2P19622 333 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 AHRP35869 848 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 RAB8AP61006 207 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 LRRC32Q14392 662 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 RPE65Q16518 533 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 TMEM201Q5SNT2 666 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 TMEM107Q6UX40 140 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 ATCAYQ86WG3 371 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 TCEANCQ8N8B7 351 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 ZBTB8BQ8NAP8 495 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 SPATA5L1Q9BVQ7 753 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 NXF2Q9GZY0 626 aaKnown RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 SCHIP1Q9P0W5 487 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-202ENST00000352886 ENTPD4Q9Y227 616 aa20.54■□□□□ 0.88
SHMT1-202ENST00000352886 ARHGAP33O14559 1287 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 RNGTTO60942 597 aaKnown RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 TP53P04637 393 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 BUD31P41223 144 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 RPS3AP61247 264 aaKnown RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 ABATP80404 500 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 ITPRIPL2Q3MIP1 535 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 TPRG1LQ5T0D9 272 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 BHLHB9Q6PI77 547 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 BCDIN3DQ7Z5W3 292 aaKnown RBP20.53■□□□□ 0.88
SHMT1-202ENST00000352886 CACTIN-AS1Q8N1I8 211 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 KLHL6Q8WZ60 621 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 APOOQ9BUR5 198 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 BCL2L10Q9HD36 194 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 CTPS2Q9NRF8 586 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 TMEM221A6NGB7 291 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 KIAA0513O60268 411 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 GUCY1B2O75343 617 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 SLITRK5O94991 958 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 ALOX5P09917 674 aa20.53■□□□□ 0.88
SHMT1-202ENST00000352886 LSM11P83369 360 aaKnown RBP eCLIP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms