RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 STRCP1A6NGW2 1772 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 WRNQ14191 1432 aaPredicted RBP eCLIP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 IGHV3-16A0A0C4DH30 117 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 RNF212BA8MTL3 300 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 MEI4A8MW99 385 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TLR4O00206 839 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ARPC1BO15143 372 aaKnown RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 VEGFDO43915 354 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TSPAN2O60636 221 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 HSF2BPO75031 334 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 FCER2P06734 321 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 APRTP07741 180 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 MBL2P11226 248 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 P4HA1P13674 534 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 GATA1P15976 413 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 GAP43P17677 238 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 HPDP32754 393 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 SPRP35270 261 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ID1P41134 155 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 PTGER3P43115 390 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 CNN1P51911 297 aaKnown RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 LIMK2P53671 638 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 SSTP61278 116 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 HERV-K104P63124 156 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 GFPT1Q06210 699 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 PPP1R8Q12972 351 aaKnown RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 EPC2Q52LR7 807 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 DCAF12Q5T6F0 453 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 C9orf66Q5T8R8 295 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 AGAP7PQ5VUJ5 663 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 LIPJQ5W064 366 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 HIST2H2AA3Q6FI13 130 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 DLEU7Q6UYE1 221 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 LRRC49Q8IUZ0 686 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 PARP8Q8N3A8 854 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 SAMD12Q8N8I0 201 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 OR1K1Q8NGR3 316 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 OR2L2Q8NH16 312 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TOMM40LQ969M1 308 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 RAB39BQ96DA2 213 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 MRPL53Q96EL3 112 aaKnown RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 C16orf58Q96GQ5 468 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ZNF560Q96MR9 790 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 HSD17B14Q9BPX1 270 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 RAB11FIP5Q9BXF6 653 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 LRRCC1Q9C099 1032 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 CXXC4Q9H2H0 198 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ADNPQ9H2P0 1102 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TNMDQ9H2S6 317 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 NT5DC2Q9H857 520 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 EPS15L1Q9UBC2 864 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 CIDEBQ9UHD4 219 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TMCC3Q9ULS5 477 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.69□□□□□ -1.984e-6■■■□□ 17.3
HMGB1-201ENST00000326004 DIMT1Q9UNQ2 313 aaKnown RBP2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ATG4BQ9Y4P1 393 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 CSAG2Q9Y5P2 127 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 TEX264Q9Y6I9 313 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 MSH6P52701 1360 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 A2ML1A8K2U0 1454 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 CFAP74Q9C0B2 1584 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 SHPRHQ149N8 1683 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 ADGBQ8N7X0 1667 aa2.69□□□□□ -1.98
HMGB1-201ENST00000326004 SPAG9O60271 1321 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SCAPERQ9BY12 1400 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ATP10DQ9P241 1426 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 KDM5DQ9BY66 1539 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 DNMT1P26358 1616 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 IGKV3D-20A0A0C4DH25 116 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SH3PXD2BA1X283 911 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CCDC69A6NI79 296 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SLC9B1P1A6NJY1 282 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SHISA9B4DS77 424 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 NME2P1O60361 137 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 GALR3O60755 368 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SEC22BO75396 215 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CXCL14O95715 111 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 HCKP08631 526 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 OR9G9P0C7N8 305 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 FAM200BP0CF97 657 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 FOSL2P15408 326 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ACADSP16219 412 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 IL4RP24394 825 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 TNFRSF4P43489 277 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 ACADSBP45954 432 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 MTIF2P46199 727 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 GSK3BP49841 420 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CASP9P55211 416 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 GALK2Q01415 458 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 EMC2Q15006 297 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 EXOSC7Q15024 291 aaKnown RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SLC1A5Q15758 541 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 HAGHQ16775 308 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 SHROOM1Q2M3G4 852 aaPredicted RBP2.68□□□□□ -1.98
HMGB1-201ENST00000326004 HIGD2BQ4VC39 106 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 GPAT3Q53EU6 434 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 VWA2Q5GFL6 755 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 RHBDD2Q6NTF9 364 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 CDC42EP5Q6NZY7 148 aa2.68□□□□□ -1.98
HMGB1-201ENST00000326004 EMBQ6PCB8 327 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms