RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GZMMP51124 257 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 WNT4P56705 351 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CCDC58Q4VC31 144 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 PRAMEF9Q5VWM5 478 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 MEDAGQ5VYS4 303 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SLC30A6Q6NXT4 461 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SLC30A8Q8IWU4 369 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CCDC116Q8IYX3 515 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZNF433Q8N7K0 673 aaPredicted RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 SLC38A5Q8WUX1 472 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ING5Q8WYH8 240 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 OVCA2Q8WZ82 227 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 PPIL3Q9H2H8 161 aaKnown RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 OR51I1Q9H343 314 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 WNT6Q9Y6F9 365 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 TRIM64BA6NI03 449 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 MMP20O60882 483 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 TYRP14679 529 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZNF8P17098 575 aaPredicted RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 BMPR1AP36894 532 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ADAM15Q13444 863 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZNF267Q14586 743 aaPredicted RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZNF311Q5JNZ3 666 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 LY6G5CQ5SRR4 150 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 BCL2L15Q5TBC7 163 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 GDPGP1Q6ZNW5 385 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 PRR23CQ6ZRP0 262 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 PROKR2Q8NFJ6 384 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 BTN2A2Q8WVV5 523 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 SMPDL3AQ92484 453 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 TFGQ92734 400 aaPredicted RBP11.97□□□□□ -0.49
LIG1-221ENST00000613670 ECHDC3Q96DC8 303 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 CASD1Q96PB1 797 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 OR2A14Q96R47 310 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 ZDHHC4Q9NPG8 344 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 DMRT3Q9NQL9 472 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 LCTP09848 1927 aa11.97□□□□□ -0.49
LIG1-221ENST00000613670 DAPL1A0PJW8 107 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 IRGMA1A4Y4 181 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 ZNF670-ZNF695F2Z2N8 137 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 CRYZL1O95825 349 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 HLA-FP30511 346 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 PPP3R1P63098 170 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 RPL6Q02878 288 aaKnown RBP11.96□□□□□ -0.49
LIG1-221ENST00000613670 PCDH1Q08174 1060 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 STX4Q12846 297 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 MBTPS1Q14703 1052 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 TPGS2Q68CL5 300 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 PODNL1Q6PEZ8 512 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 SLC36A4Q6YBV0 504 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 CCDC190Q86UF4 302 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 NUDT13Q86X67 352 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 RASGEF1AQ8N9B8 481 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 CXorf36Q9H7Y0 433 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 ADAMTS4O75173 837 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 ARAFP10398 606 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 GPR4P46093 362 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 GIPRP48546 466 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 RHAGQ02094 409 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 SP3Q02447 781 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 IL20RBQ6UXL0 311 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 CXXC5Q7LFL8 322 aaKnown RBP11.96□□□□□ -0.49
LIG1-221ENST00000613670 ZNF557Q8N988 423 aaPredicted RBP11.96□□□□□ -0.49
LIG1-221ENST00000613670 MACROD1Q9BQ69 325 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 SLA2Q9H6Q3 261 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 EGLN3Q9H6Z9 239 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 CWH43Q9H720 699 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 BRF2Q9HAW0 419 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 ZNF334Q9HCZ1 680 aaPredicted RBP11.96□□□□□ -0.49
LIG1-221ENST00000613670 KRCC1Q9NPI7 259 aaPredicted RBP11.96□□□□□ -0.49
LIG1-221ENST00000613670 PRELID1Q9Y255 219 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 ALG5Q9Y673 324 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 PARP14Q460N5 1801 aa11.96□□□□□ -0.49
LIG1-221ENST00000613670 PIKFYVEQ9Y2I7 2098 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 H0YIV9 168 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 EIF3FO00303 357 aaPredicted RBP11.96□□□□□ -0.5
LIG1-221ENST00000613670 GAPDHSO14556 408 aaPredicted RBP11.96□□□□□ -0.5
LIG1-221ENST00000613670 UGDHO60701 494 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 MRPL3P09001 348 aaKnown RBP11.96□□□□□ -0.5
LIG1-221ENST00000613670 ZNF30P17039 623 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 PSPHP78330 225 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 LRRC32Q14392 662 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 MTFR2Q6P444 385 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 NXPE4Q6UWF7 544 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 PHC2Q8IXK0 858 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 IZUMO1Q8IYV9 350 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 DNAJC5GQ8N7S2 189 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 KIAA1958Q8N8K9 716 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 OR4F15Q8NGB8 312 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 QRSL1Q9H0R6 528 aaKnown RBP11.96□□□□□ -0.5
LIG1-221ENST00000613670 HHATLQ9HCP6 504 aa11.96□□□□□ -0.5
LIG1-221ENST00000613670 DNMT3BQ9UBC3 853 aaKnown RBP11.96□□□□□ -0.5
LIG1-221ENST00000613670 A0A075B6Q4 140 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 LRRTM2O43300 516 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 STX11O75558 287 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 CXCL14O95715 111 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 ATF4P18848 351 aaPredicted RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 ZNF81P51508 661 aa11.95□□□□□ -0.5
LIG1-221ENST00000613670 WDR5P61964 334 aaKnown RBP11.95□□□□□ -0.5
LIG1-221ENST00000613670 IFITM2Q01629 132 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms