RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ATAD3AQ9NVI7 634 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 DNAAF2Q9NVR5 837 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZNF282Q9UDV7 671 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 ATP6V1HQ9UI12 483 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 PADI2Q9Y2J8 665 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ARID1BQ8NFD5 2236 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZNF318Q5VUA4 2279 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 LOC105369274A0A096LPK9 316 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 LOC102723532A0A0G2JNH3 316 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 C1orf226A1L170 272 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 RTCAO00442 366 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZSCAN9O15535 394 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 SRPX2O60687 465 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 BCL10O95999 233 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 C9P02748 559 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 STATHP02808 62 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 GBAP04062 536 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZNF806P0C7X5 589 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 CKMT1AP12532 417 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZNF12P17014 697 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 PCMT1P22061 227 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ACVR2AP27037 513 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 TPP2P29144 1249 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 PCGF2P35227 344 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 GRK6P43250 576 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 SSR2P43308 183 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 GSTM5P46439 218 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 YAP1P46937 504 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 MAPK12P53778 367 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 IST1P53990 364 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 DAB2P98082 770 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 RBBP4Q09028 425 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 CDK5R2Q13319 367 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 FGD3Q5JSP0 725 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 CPTPQ5TA50 214 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ANKRD26P1Q6NSI1 321 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ABHD17CQ6PCB6 329 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 IKBIPQ70UQ0 350 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ZNF551Q7Z340 670 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 TMEM179BQ7Z7N9 219 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ANKRD46Q86W74 232 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 MCATQ8IVS2 390 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 OR4N4Q8N0Y3 316 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 C10orf111Q8N326 155 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 DNAJC22Q8N4W6 341 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 SUMF1Q8NBK3 374 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 OR7A2PQ8NGA2 310 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 CDC26Q8NHZ8 85 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.05□□□□□ -0.64
VRK3-223ENST00000601341 C16orf78Q8WTQ4 265 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 GAL3ST3Q96A11 431 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 MTERF3Q96E29 417 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 PITX2Q99697 317 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 SORBS1Q9BX66 1292 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 AICDAQ9GZX7 198 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 LHPPQ9H008 270 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 TPT1P8Q9HAU6 139 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 FAM60AQ9NP50 221 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 PDE7BQ9NP56 450 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 MYNNQ9NPC7 610 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 LHX9Q9NQ69 397 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 SOHLH2Q9NX45 425 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 ADPRHL2Q9NX46 363 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 KLHL3Q9UH77 587 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 NDRG4Q9ULP0 352 aaKnown RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 B3GNT3Q9Y2A9 372 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 MN1Q10571 1320 aaPredicted RBP11.05□□□□□ -0.64
VRK3-223ENST00000601341 DMDP11532 3685 aa11.05□□□□□ -0.64
VRK3-223ENST00000601341 IGHV5-51A0A0C4DH38 117 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 A0A1W2PPW3 197 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 LRATO95237 230 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 EIF2S1P05198 315 aaKnown RBP11.04□□□□□ -0.64
VRK3-223ENST00000601341 GSNP06396 782 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 HTR1AP08908 422 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 MATN1P21941 496 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 VSX2P58304 361 aaPredicted RBP11.04□□□□□ -0.64
VRK3-223ENST00000601341 TAS2R50P59544 299 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 TEKQ02763 1124 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 SPIDRQ14159 915 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 MEP1AQ16819 746 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 HKDC1Q2TB90 917 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 CTU2Q2VPK5 515 aaKnown RBP11.04□□□□□ -0.64
VRK3-223ENST00000601341 PROX2Q3B8N5 592 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 PERM1Q5SV97 790 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 LAIR2Q6ISS4 152 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 FAHD1Q6P587 224 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 DBX2Q6ZNG2 339 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 ZNF621Q6ZSS3 439 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 CSNK1A1LQ8N752 337 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 KCT2Q8NC54 265 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 C11orf65Q8NCR3 313 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 TRUB1Q8WWH5 349 aaKnown RBP11.04□□□□□ -0.64
VRK3-223ENST00000601341 IPCEF1Q8WWN9 437 aaPredicted RBP11.04□□□□□ -0.64
VRK3-223ENST00000601341 FKBP10Q96AY3 582 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 DCUN1D5Q9BTE7 237 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 ROGDIQ9GZN7 287 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 GALNT8Q9NY28 637 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 SCN3BQ9NY72 215 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 SEMA5BQ9P283 1151 aa11.04□□□□□ -0.64
VRK3-223ENST00000601341 ENPP5Q9UJA9 477 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms