RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CT62P0C5K7 136 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 CPMP14384 443 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 PORP16435 677 aaPredicted RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 SERPINB3P29508 390 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 DEKP35659 375 aaKnown RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 KRT6CP48668 564 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 SLC10A1Q14973 349 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 EBPQ15125 230 aaKnown RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 RASA2Q15283 850 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 CDSNQ15517 529 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 HYAL4Q2M3T9 481 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 GXYLT1Q4G148 440 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 TCHHL1Q5QJ38 904 aaPredicted RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 SLC48A1Q6P1K1 146 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 SH2D5Q6ZV89 423 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 GPRIN3Q6ZVF9 776 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 SLC22A9Q8IVM8 553 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 GSPT2Q8IYD1 628 aaKnown RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 EID3Q8N140 333 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 TMEM251Q8N6I4 163 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 ZNF615Q8N8J6 731 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 PAQR8Q8TEZ7 354 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 TP53INP1Q96A56 240 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 SPACA9Q96E40 222 aaPredicted RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 GAL3ST4Q96RP7 486 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 ZNF382Q96SR6 550 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 HBEGFQ99075 208 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 CHST11Q9NPF2 352 aa13.9□□□□□ -0.18
LIG1-215ENST00000597901 RYDENQ9NUL5 291 aaKnown RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.9□□□□□ -0.18
LIG1-215ENST00000597901 CLDN14O95500 239 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 FBXO45P0C2W1 286 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 CHN1P15882 459 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 S1PR1P21453 382 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 NT5EP21589 574 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 MAGEA5P43359 124 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 MGAT2Q10469 447 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 EMC4Q5J8M3 183 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 TMEM64Q6YI46 380 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 CD163Q86VB7 1156 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 TICAM1Q8IUC6 712 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 GALNT12Q8IXK2 581 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 DND1Q8IYX4 353 aaKnown RBP13.89□□□□□ -0.19
LIG1-215ENST00000597901 TAGAPQ8N103 731 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 MMP21Q8N119 569 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 FAM109AQ8N4B1 249 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 C1orf52Q8N6N3 182 aaKnown RBP13.89□□□□□ -0.19
LIG1-215ENST00000597901 ZNF441Q8N8Z8 693 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 OR7G1Q8NGA0 311 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 L3HYPDHQ96EM0 354 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 OR10A5Q9H207 317 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 PROK2Q9HC23 129 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 CNIH4Q9P003 139 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 PSME2Q9UL46 239 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 UNC79Q9P2D8 2635 aa13.89□□□□□ -0.19
LIG1-215ENST00000597901 A0A1B0GVC2 190 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 ATP6AP2A0A1C7CYW4 349 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 NPIPA2E9PIF3 369 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 NPIPA3F8WFD2 350 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 G3V2L1 256 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 ERAL1O75616 437 aaKnown RBP13.88□□□□□ -0.19
LIG1-215ENST00000597901 ATP6AP2O75787 350 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 IGHG3P01860 377 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 SHBGP04278 402 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 HSD3B1P14060 373 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 PRF1P14222 555 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 CSNK2A2P19784 350 aaPredicted RBP13.88□□□□□ -0.19
LIG1-215ENST00000597901 HSD3B2P26439 372 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 HMOX2P30519 316 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 FEN1P39748 380 aaKnown RBP13.88□□□□□ -0.19
LIG1-215ENST00000597901 PKNOX1P55347 436 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 TRA2BP62995 288 aaKnown RBP13.88□□□□□ -0.19
LIG1-215ENST00000597901 MAP4K2Q12851 820 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 HLA-DQA1Q5Y7H0 255 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 TMEM211Q6ICI0 200 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 FAM111BQ6SJ93 734 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 TRILQ7L0X0 811 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 FAM13CQ8NE31 585 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 OR10G3Q8NGC4 313 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 ADIPOR1Q96A54 375 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 L2HGDHQ9H9P8 463 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 EMCNQ9ULC0 261 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 TIMM22Q9Y584 194 aa13.88□□□□□ -0.19
LIG1-215ENST00000597901 CHCHD2Q9Y6H1 151 aaPredicted RBP13.88□□□□□ -0.19
LIG1-215ENST00000597901 CAPN14A8MX76 684 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 CELA3AP09093 270 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 SLCO1A2P46721 670 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 CCT5P48643 541 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 KCNJ2P63252 427 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 CSTF3Q12996 717 aaKnown RBP13.87□□□□□ -0.19
LIG1-215ENST00000597901 LCP2Q13094 533 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 NTRK2Q16620 822 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 PRICKLE4Q2TBC4 344 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 PRAMEF20Q5VT98 475 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 ZYG11AQ6WRX3 759 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 SRRM1Q8IYB3 904 aaKnown RBP13.87□□□□□ -0.19
LIG1-215ENST00000597901 FBXW8Q8N3Y1 598 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 CCNYL1Q8N7R7 359 aa13.87□□□□□ -0.19
LIG1-215ENST00000597901 GBP7Q8N8V2 638 aaPredicted RBP13.87□□□□□ -0.19
LIG1-215ENST00000597901 OR5M3Q8NGP4 307 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms