RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RNF44Q7L0R7 432 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 ZNF605Q86T29 641 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 IQCHQ86VS3 1027 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 TSPYL5Q86VY4 417 aaPredicted RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 BAHD1Q8TBE0 780 aaPredicted RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 ZDHHC1Q8WTX9 485 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 NR4A3Q92570 626 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 CNRIP1Q96F85 164 aaPredicted RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 ZNF354BQ96LW1 612 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 NELL2Q99435 816 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 TMEM121BQ9BXQ6 578 aaPredicted RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 POLR1BQ9H9Y6 1135 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 CCNB1IP1Q9NPC3 277 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 PAPOLBQ9NRJ5 636 aaKnown RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 SCN3BQ9NY72 215 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 TMEM9Q9P0T7 183 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 PILRAQ9UKJ1 303 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 NDRG4Q9ULP0 352 aaKnown RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 KLHL20Q9Y2M5 609 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 TESMINQ9Y4I5 508 aa10.63□□□□□ -0.71
LIG3-204ENST00000585740 GPC6Q9Y625 555 aaPredicted RBP10.63□□□□□ -0.71
LIG3-204ENST00000585740 A0A0G2JPF8 293 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 A0A0J9YVX5 310 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 HNRNPCL2B2RXH8 293 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 HNRNPCL3B7ZW38 293 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 E9PQ18 207 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 H3BSA7 217 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SLC1A7O00341 560 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 AXIN1O15169 862 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 B4GALT2O60909 372 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 MITFO75030 526 aaPredicted RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 SLITRK5O94991 958 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 CCNB2O95067 398 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 GADD45GO95257 159 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 OXSR1O95747 527 aaPredicted RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 ANGPTL1O95841 491 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 STATHP02808 62 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 HNRNPCL4P0DMR1 293 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 OR12D1P0DN82 309 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 ALOX12P18054 663 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 CD27P26842 260 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 KCNJ5P48544 419 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 RPS26P62854 115 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 ROR2Q01974 943 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 TEKQ02763 1124 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SIGLEC14Q08ET2 396 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 CDK5R2Q13319 367 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 DYNC1I2Q13409 638 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 LSAMPQ13449 338 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SIM2Q14190 667 aaPredicted RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 TCEA2Q15560 299 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 MEP1AQ16819 746 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 EXOC3L2Q2M3D2 409 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 C18orf63Q68DL7 685 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 FAM180BQ6P0A1 224 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SZRD1Q7Z422 152 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 TSEN54Q7Z6J9 526 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 GALNT5Q7Z7M9 940 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 TRIM73Q86UV7 250 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 GKN2Q86XP6 184 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 CCDC116Q8IYX3 515 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 TAGAPQ8N103 731 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 LGI4Q8N135 537 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 ZNF687Q8N1G0 1237 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 LINC00471Q8N535 108 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 KCT2Q8NC54 265 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 NUP43Q8NFH3 380 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 OR4K14Q8NGD5 310 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SUN3Q8TAQ9 357 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SLC37A2Q8TED4 501 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 PHF10Q8WUB8 498 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 XAGE5Q8WWM1 108 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 NMD3Q96D46 503 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 ZNF681Q96N22 645 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 BARD1Q99728 777 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 MAPKAP1Q9BPZ7 522 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 MACROD1Q9BQ69 325 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 UCK1Q9HA47 277 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 HRASLS2Q9NWW9 162 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SEC14L3Q9UDX4 400 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 KCND3Q9UK17 655 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 TMCC3Q9ULS5 477 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 LIPT1Q9Y234 373 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SH3GLB1Q9Y371 365 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 SNX11Q9Y5W9 270 aa10.62□□□□□ -0.71
LIG3-204ENST00000585740 TDRD6O60522 2096 aaKnown RBP10.62□□□□□ -0.71
LIG3-204ENST00000585740 DCHS1Q96JQ0 3298 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 OR5K3A6NET4 321 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 DUXAA6NLW8 204 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 METTL12A8MUP2 240 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 PROB1E7EW31 1015 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 H0YGG7 62 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 CASC3O15234 703 aaKnown RBP10.61□□□□□ -0.71
LIG3-204ENST00000585740 IL7RP16871 459 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 JUNDP17535 347 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 PEX19P40855 299 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 OR1E2P47887 323 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 LIMS1P48059 325 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 MAPK10P53779 464 aa10.61□□□□□ -0.71
LIG3-204ENST00000585740 ARF3P61204 181 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms