RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZDHHC18Q9NUE0 388 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 L3MBTL1Q9Y468 752 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 IKBKGQ9Y6K9 419 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 MED13LQ71F56 2210 aa15.73■□□□□ 0.11
CLN3-216ENST00000565316 PGRMC2O15173 223 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 SIX3O95343 332 aaPredicted RBP15.72■□□□□ 0.11
CLN3-216ENST00000565316 CLDN9O95484 217 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 CASQ1P31415 396 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 SERPINB8P50452 374 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 ETF1P62495 437 aaKnown RBP15.72■□□□□ 0.11
CLN3-216ENST00000565316 FUT7Q11130 342 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 TBCELQ5QJ74 424 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 OR52E8Q6IFG1 317 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 KLC3Q6P597 504 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 ULK2Q8IYT8 1036 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 ANP32BQ92688 251 aaKnown RBP15.72■□□□□ 0.11
CLN3-216ENST00000565316 SERPINI1Q99574 410 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 EXO5Q9H790 373 aa15.72■□□□□ 0.11
CLN3-216ENST00000565316 C2orf92A0A1B0GVN3 265 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 OR7A17O14581 309 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 TYK2P29597 1187 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 SSTR4P31391 388 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 TECRLQ5HYJ1 363 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 C10orf62Q5T681 223 aaPredicted RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 SEM1Q6ZVN7 128 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 ZNF615Q8N8J6 731 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 ISL2Q96A47 359 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 NTNG2Q96CW9 530 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 MRRFQ96E11 262 aaKnown RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 SECISBP2Q96T21 854 aaKnown RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 DOHHQ9BU89 302 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 NTMT1Q9BV86 223 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 FUT8Q9BYC5 575 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 SLC6A15Q9H2J7 730 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 ACSS3Q9H6R3 686 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 NOL11Q9H8H0 719 aaKnown RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 ALKBH4Q9NXW9 302 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 CPSF2Q9P2I0 782 aaKnown RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 B4GALT7Q9UBV7 327 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 ADAM29Q9UKF5 820 aa15.71■□□□□ 0.11
CLN3-216ENST00000565316 HRNRQ86YZ3 2850 aaPredicted RBP15.71■□□□□ 0.11
CLN3-216ENST00000565316 A0A1W2PS29 197 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 ESYT3A0FGR9 886 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 CAPN14A8MX76 684 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 TP53I11O14683 189 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 LRATO95237 230 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 GBAP04062 536 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 CD1EP15812 388 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 MAGEA12P43365 314 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 MYBPHQ13203 477 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 RPS6KA2Q15349 733 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 FRG2Q64ET8 278 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 TMEM64Q6YI46 380 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 GALNT12Q8IXK2 581 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 PLD6Q8N2A8 252 aaKnown RBP15.7■□□□□ 0.1
CLN3-216ENST00000565316 PTGR2Q8N8N7 351 aaPredicted RBP15.7■□□□□ 0.1
CLN3-216ENST00000565316 C17orf47Q8NEP4 570 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 OR52B6Q8NGF0 335 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 SPPL2AQ8TCT8 520 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 ADIPOR1Q96A54 375 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 FRG2BQ96QU4 278 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 UBQLN3Q9H347 655 aa15.7■□□□□ 0.1
CLN3-216ENST00000565316 TEX10Q9NXF1 929 aaPredicted RBP15.7■□□□□ 0.1
CLN3-216ENST00000565316 HSPB2A8KAH6 182 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 AHRRA9YTQ3 701 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 STX16-NPEPL1H3BU86 382 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 SYT5O00445 386 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 STX16O14662 325 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 SNX4O95219 450 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 ZWINTO95229 277 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 CT62P0C5K7 136 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 S1PR1P21453 382 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 PIK3R1P27986 724 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 DNAJA1P31689 397 aaKnown RBP15.69■□□□□ 0.1
CLN3-216ENST00000565316 TRPC1P48995 793 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 CCNG1P51959 295 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 FBXW4P57775 412 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 SLC7A5Q01650 507 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 HSPB2Q16082 182 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 UAP1Q16222 522 aaPredicted RBP15.69■□□□□ 0.1
CLN3-216ENST00000565316 FNDC7Q5VTL7 733 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 TMEM198Q66K66 360 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 ARSKQ6UWY0 536 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 SYT10Q6XYQ8 523 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 TMEM200AQ86VY9 491 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 RELL1Q8IUW5 271 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 LIX1Q8N485 282 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 OR7G1Q8NGA0 311 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 OR4K14Q8NGD5 310 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 DIO2Q92813 273 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 ZNF597Q96LX8 424 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 JSRP1Q96MG2 331 aaPredicted RBP15.69■□□□□ 0.1
CLN3-216ENST00000565316 CDK15Q96Q40 435 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 ANGPTL4Q9BY76 406 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 OR10A5Q9H207 317 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 VPS11Q9H270 941 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 ZNF358Q9NW07 568 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 NINJ2Q9NZG7 142 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 PCTPQ9UKL6 214 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 TMCO1Q9UM00 188 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms