RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TAAR2Q9P1P5 351 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 BTNL2Q9UIR0 455 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 KCNE2Q9Y6J6 123 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 A8MUA0 341 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 E9PQ18 207 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 SLC28A2O43868 658 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 KLHL18O94889 574 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 EPHX1P07099 455 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 IL12RB1P42701 662 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 MANFP55145 182 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 GPNMBQ14956 572 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 EIF4HQ15056 248 aaKnown RBP11.7□□□□□ -0.54
LDLR-205ENST00000557933 ARSIQ5FYB1 569 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 ANXA8L1Q5VT79 327 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 LIPJQ5W064 366 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 C22orf39Q6P5X5 142 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.7□□□□□ -0.549e-8■■■■□ 21.8
LDLR-205ENST00000557933 PRR23CQ6ZRP0 262 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 AMIGO1Q86WK6 493 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 PGBD3Q8N328 593 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 VWA5B2Q8N398 1253 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 FLCNQ8NFG4 579 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 OR52I1Q8NGK6 324 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 SUN5Q8TC36 379 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 RNF208Q9H0X6 261 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 EQTNQ9NQ60 294 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 SLC23A1Q9UHI7 598 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 PCDHGB2Q9Y5G2 931 aa11.7□□□□□ -0.54
LDLR-205ENST00000557933 A0A1W2PPK0 400 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 CIB4A0PJX0 185 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 GREM1O60565 184 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 LEFTY1O75610 366 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 UGT2B17O75795 530 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 C8orf89P0DMQ9 161 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 BUD31P41223 144 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 INPP1P49441 399 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 FCHO2Q0JRZ9 810 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 WSCD2Q2TBF2 565 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 YIF1BQ5BJH7 314 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 ZNF770Q6IQ21 691 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 KRT73Q86Y46 540 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 C19orf18Q8NEA5 215 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 BEST4Q8NFU0 473 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 BBS10Q8TAM1 723 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 COQ7Q99807 217 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 ZNF717Q9BY31 904 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 SEC14L3Q9UDX4 400 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 CACNA1IQ9P0X4 2223 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 SCN3AQ9NY46 2000 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 PIPSLA2A3N6 862 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 HYKKA2RU49 373 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 FAM25AB3EWG3 89 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 FAM25CB3EWG5 89 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 FAM25GB3EWG6 89 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 LANCL1O43813 399 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 CRYZL1O95825 349 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 PAHP00439 452 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 CYP2A6P11509 494 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 DDX5P17844 614 aaKnown RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 SSTR2P30874 369 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 ETV6P41212 452 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 SRP9P49458 86 aaKnown RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 P2RX3P56373 397 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 SNRPD1P62314 119 aaKnown RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 CSTF1Q05048 431 aaKnown RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 FAPQ12884 760 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 C1DQ13901 141 aaKnown RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 GPR19Q15760 415 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 CLPPQ16740 277 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 GLYR1Q49A26 553 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 DDI2Q5TDH0 399 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 GRHL2Q6ISB3 625 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 PGBD2Q6P3X8 592 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 PODNL1Q6PEZ8 512 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 SLCO4C1Q6ZQN7 724 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 GAREM2Q75VX8 874 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 OR8H1Q8NGG4 311 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 SLC25A46Q96AG3 418 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 HDHD2Q9H0R4 259 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 OR2AG1Q9H205 316 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 TRIM45Q9H8W5 580 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 GULP1Q9UBP9 304 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 PCYT1BQ9Y5K3 369 aaPredicted RBP11.69□□□□□ -0.54
LDLR-205ENST00000557933 A3GALT2U3KPV4 340 aa11.69□□□□□ -0.54
LDLR-205ENST00000557933 ALPK3Q96L96 1907 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ATG2BQ96BY7 2078 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 TEX46H3BTG2 121 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 RNASET2O00584 256 aaKnown RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 ZNF780AO75290 641 aaPredicted RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 TOXO94900 526 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SLC2A10O95528 541 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 CBSLP0DN79 551 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 OSMP13725 252 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 NPPBP16860 134 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 MMP11P24347 488 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 CBSP35520 551 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SMSP52788 366 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SYT14P1Q58G82 188 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SLC35F1Q5T1Q4 408 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms