RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TAS2R41P59536 307 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RPS21P63220 83 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CD300CQ08708 224 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SLC13A2Q13183 592 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 INAQ16352 499 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SNAPC1Q16533 368 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TSTQ16762 297 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM52BQ4KMG9 183 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 BCL7AQ4VC05 210 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ARMCX4Q5H9R4 360 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 RBM48Q5RL73 367 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 AMIGO1Q86WK6 493 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GATAD2AQ86YP4 633 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 LRRC56Q8IYG6 542 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GOLM1Q8NBJ4 401 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GPR32P1Q8NGA4 272 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 OR6T1Q8NGN1 323 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ADAMTS15Q8TE58 950 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GGHQ92820 318 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CNRIP1Q96F85 164 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ZBED6CLQ96FA7 236 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PLEKHA8Q96JA3 519 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 AICDAQ9GZX7 198 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SERHL2Q9H4I8 314 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SYNDIG1Q9H7V2 258 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PLGRKTQ9HBL7 147 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 SLC6A20Q9NP91 592 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 LHX9Q9NQ69 397 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ACER3Q9NUN7 267 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ASIC5Q9NY37 505 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF639Q9UID6 485 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GPR34Q9UPC5 381 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GBF1Q92538 1859 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 DENND4CQ5VZ89 1909 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TSPAN11A1L157 253 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 LRIT2A6NDA9 550 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FAM183AA6NL82 134 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 EFCAB9A8MZ26 197 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ADAMDEC1O15204 470 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TBX1O43435 398 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ENTPD6O75354 484 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SOX30O94993 753 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OCM2P0CE71 109 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OCMP0CE72 109 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ALOX12P18054 663 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CBLP22681 906 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PPP2R1BP30154 601 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CTHP32929 405 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GRK5P34947 590 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PCGF2P35227 344 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SOX3P41225 446 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RPS6KA3P51812 740 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ITGA1P56199 1179 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TEAD4Q15561 434 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TRIM16LQ309B1 348 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CRB2Q5IJ48 1285 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MLIPQ5VWP3 458 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FRMPD2BQ6IN97 320 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 KIAA1161Q6NSJ0 714 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 POMZP3Q6PJE2 187 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 LCTLQ6UWM7 567 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CASP12Q6UXS9 341 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 Q6ZSR6 202 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PLPP6Q8IY26 295 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 LAS2Q8IYD9 372 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OXR1Q8N573 874 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GATSQ8NAP1 163 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SLC16A11Q8NCK7 471 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MCFD2Q8NI22 146 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 STARD8Q92502 1023 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PIK3R3Q92569 461 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HHIPQ96QV1 700 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CCDC3Q9BQI4 270 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 DSN1Q9H410 356 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 EGLN3Q9H6Z9 239 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MYNNQ9NPC7 610 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HRASLS2Q9NWW9 162 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GDE1Q9NZC3 331 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SPATA7Q9P0W8 599 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MALT1Q9UDY8 824 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 NDOR1Q9UHB4 597 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ATP6V1HQ9UI12 483 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GPR55Q9Y2T6 319 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RWDD3Q9Y3V2 267 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 WDFY4Q6ZS81 3184 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 COL4A4P53420 1690 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PRSS38A1L453 326 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CARNS1A5YM72 827 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 A8MU76 341 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM229AB2RXF0 380 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SGK494L7N484 410 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HMGN4O00479 90 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FFAR1O14842 300 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HCRTR1O43613 425 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PEX14O75381 377 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 UGT2B17O75795 530 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 IFNA14P01570 189 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 H1F0P07305 194 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HSD3B1P14060 373 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TCEA1P23193 301 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms