RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TNFRSF17Q02223 184 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 GUCY2DQ02846 1103 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 BIKQ13323 160 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ZNF267Q14586 743 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 SETDB1Q15047 1291 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 PFKFB4Q16877 469 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 C1orf185Q5T7R7 199 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 WLSQ5T9L3 541 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 B3GNT6Q6ZMB0 384 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 SPNS3Q6ZMD2 512 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 MYLK4Q86YV6 388 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 ST13P4Q8IZP2 240 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 CENPLQ8N0S6 344 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 SLC15A4Q8N697 577 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 C7orf57Q8NEG2 295 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 SLC22A8Q8TCC7 542 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 TANKQ92844 425 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 SARAFQ96BY9 339 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 SPACA9Q96E40 222 aaPredicted RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 FBXL20Q96IG2 436 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ZNF559Q9BR84 538 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ERVK-6Q9BXR3 956 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 GSX2Q9BZM3 304 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ACBD3Q9H3P7 528 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 LDAHQ9H6V9 325 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 EXO5Q9H790 373 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 MS4A12Q9NXJ0 267 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 Q9UFV3 132 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ADGRE2Q9UHX3 823 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 PHF11Q9UIL8 331 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 CNOT11Q9UKZ1 510 aaKnown RBP7.79□□□□□ -1.16
USP28-215ENST00000545608 ERVK-19Q9WJR5 959 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ACOT9Q9Y305 439 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 TSC22D4Q9Y3Q8 395 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ASB4Q9Y574 426 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 ANGPTL3Q9Y5C1 460 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP28-215ENST00000545608 OTOGQ6ZRI0 2925 aa7.79□□□□□ -1.16
USP28-215ENST00000545608 INTS1Q8N201 2190 aaKnown RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 SPG11Q96JI7 2443 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 A0A0A6YYD5 115 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 IQANK1A0A1B0GTG1 560 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 A0A1W2PS29 197 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 LRRC3CA6NJW4 275 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 H0YIV9 168 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 DYRK3O43781 588 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 OR10H2O60403 315 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 HCN1O60741 890 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 WDR1O75083 606 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 LRATO95237 230 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 CLPSP04118 112 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 GFAPP14136 432 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 PTX3P26022 381 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 TLX1P31314 330 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 STX2P32856 288 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 NEK2P51955 445 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 SLC37A1P57057 533 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 KCNJ2P63252 427 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 PLIN5Q00G26 463 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 SNTB1Q13884 538 aaKnown RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 EBPQ15125 230 aaKnown RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 CPSF6Q16630 551 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP28-215ENST00000545608 SPRED3Q2MJR0 410 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 MROH9Q5TGP6 573 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 LIPJQ5W064 366 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 CES4AQ5XG92 561 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 TMEM64Q6YI46 380 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 RNF111Q6ZNA4 994 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 SEM1Q6ZVN7 128 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 ZNF771Q7L3S4 317 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 GOLGA7Q7Z5G4 137 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 TMEM200AQ86VY9 491 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 CLYBLQ8N0X4 340 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 LRRC25Q8N386 305 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 FBXW8Q8N3Y1 598 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 FAM13CQ8NE31 585 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 OR10G3Q8NGC4 313 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 RHEBL1Q8TAI7 183 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 WDR20Q8TBZ3 569 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 NRGNQ92686 78 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 RIT1Q92963 219 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 ART5Q96L15 291 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 JSRP1Q96MG2 331 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 GPR78Q96P69 363 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 GAL3ST4Q96RP7 486 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 CENPKQ9BS16 269 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 WWTR1Q9GZV5 400 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 SLC6A15Q9H2J7 730 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 ZNF703Q9H7S9 590 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 DDX31Q9H8H2 851 aaKnown RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 ACTR8Q9H981 624 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 ZFP64Q9NPA5 681 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 KCNN3Q9UGI6 736 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 UTP11Q9Y3A2 253 aaKnown RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 RNF11Q9Y3C5 154 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 L3MBTL1Q9Y468 752 aa7.78□□□□□ -1.16
USP28-215ENST00000545608 CHCHD2Q9Y6H1 151 aaPredicted RBP7.78□□□□□ -1.16
USP28-215ENST00000545608 A0A087X1B8 175 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 A0A096LPK6 155 aa7.77□□□□□ -1.17
USP28-215ENST00000545608 SYCE1LA8MT33 242 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms