RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ABI3Q9P2A4 366 aa16.36■□□□□ 0.21
CLSTN3-210ENST00000540931 DCTN4Q9UJW0 460 aa16.36■□□□□ 0.21
CLSTN3-210ENST00000540931 GPR45Q9Y5Y3 372 aa16.36■□□□□ 0.21
CLSTN3-210ENST00000540931 TTC36A6NLP5 189 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 GABRR3A8MPY1 467 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 SEC24DO94855 1032 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 NT5EP21589 574 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 ITGA3P26006 1051 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 FRKP42685 505 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 KIR3DL1P43629 444 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 MANFP55145 182 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 MYBPC3Q14896 1274 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 AGAP7PQ5VUJ5 663 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 BHLHB9Q6PI77 547 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 MSANTD1Q6ZTZ1 278 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 OR4N5Q8IXE1 308 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 VWA5B2Q8N398 1253 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 ZNF843Q8N446 348 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 PTPMT1Q8WUK0 201 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 MOAP1Q96BY2 351 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 AGAP4Q96P64 663 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 OR52B2Q96RD2 323 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 WDR77Q9BQA1 342 aaPredicted RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 DUSP26Q9BV47 211 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 SEMA4CQ9C0C4 833 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 CLMPQ9H6B4 373 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 CXorf21Q9HAI6 301 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 FAM120CQ9NX05 1096 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 C5AR2Q9P296 337 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 PTGFRNQ9P2B2 879 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 PRODH2Q9UF12 536 aa16.35■□□□□ 0.21
CLSTN3-210ENST00000540931 A0A087WV62 115 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 E9PBE3 544 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 ERVH48-1M5A8F1 160 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 AKAP10O43572 662 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 PLOD3O60568 738 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 COQ9O75208 318 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 CEACAM4O75871 244 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 ZFAND5O76080 213 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 LRATO95237 230 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 FEN1P39748 380 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 NCBP2P52298 156 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 FUT7Q11130 342 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 CHAF1BQ13112 559 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 SQLEQ14534 574 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 CRB2Q5IJ48 1285 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 FAM69BQ5VUD6 431 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 HSDL2Q6YN16 418 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 SLC29A4Q7RTT9 530 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 ELP5Q8TE02 316 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 TSPEARQ8WU66 669 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 SENP5Q96HI0 755 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 ZNF354BQ96LW1 612 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 LMF1Q96S06 567 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 TMEM120AQ9BXJ8 343 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 DEFB126Q9BYW3 111 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 RMND5AQ9H871 391 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 KCNK13Q9HB14 408 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 C3orf14Q9HBI5 128 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 GIMAP2Q9UG22 337 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 MAST4O15021 2626 aa16.34■□□□□ 0.21
CLSTN3-210ENST00000540931 TENM4Q6N022 2769 aa16.33■□□□□ 0.21
CLSTN3-210ENST00000540931 MGAQ8IWI9 3026 aa16.33■□□□□ 0.21
CLSTN3-210ENST00000540931 PRSS51A0A1B0GVH4 220 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 OR2W5A6NFC9 320 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 PLOD2O00469 737 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 RNASET2O00584 256 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC22A2O15244 555 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 PRAMEF2O60811 474 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 CCDC22O60826 627 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 PRKRAO75569 313 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 ALDOCP09972 364 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 S100A3P33764 101 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 GPC1P35052 558 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 DCAF7P61962 342 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 ID2Q02363 134 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 TBR1Q16650 682 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 PRICKLE4Q2TBC4 344 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 FAM219BQ5XKK7 198 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 PCSK4Q6UW60 755 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 RNF111Q6ZNA4 994 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 SPATA21Q7Z572 469 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 ZNF605Q86T29 641 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 CCDC116Q8IYX3 515 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 C17orf47Q8NEP4 570 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 NFAM1Q8NET5 270 aaPredicted RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 CLHC1Q8NHS4 586 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 SLC2A12Q8TD20 617 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 OR5P2Q8WZ92 322 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 GFM2Q969S9 779 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 CTHRC1Q96CG8 243 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 THOC3Q96J01 351 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 AMDHD1Q96NU7 426 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 EBF4Q9BQW3 602 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 OR8D2Q9GZM6 311 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 GPR83Q9NYM4 423 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 TAS2R9Q9NYW1 312 aa16.33■□□□□ 0.2
CLSTN3-210ENST00000540931 A0A1W2PRB8 838 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 FAM234BA2RU67 622 aa16.32■□□□□ 0.2
CLSTN3-210ENST00000540931 A8MUA0 341 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms