RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NOXRED1Q6NXP6 359 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 IKBIPQ70UQ0 350 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ATCAYQ86WG3 371 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 C9orf40Q8IXQ3 194 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 GPALPP1Q8IXQ4 340 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 SAMD14Q8IZD0 417 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 GALNT11Q8NCW6 608 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 OR5L2Q8NGL0 311 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 AGR3Q8TD06 166 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 C19orf60Q96EN9 201 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 SCMH1Q96GD3 660 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 FCRL1Q96LA6 429 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 CCT7Q99832 543 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 LRTM1Q9HBL6 345 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ASF1BQ9NVP2 202 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 LRFN1Q9P244 771 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ZDHHC2Q9UIJ5 367 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 UTS2RQ9UKP6 389 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 ERVK-19Q9WJR5 959 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 NTNG1Q9Y2I2 539 aa13.96□□□□□ -0.17
CPSF1-208ENST00000532560 WBP11Q9Y2W2 641 aaKnown RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 POLR3HQ9Y535 204 aaPredicted RBP13.96□□□□□ -0.17
CPSF1-208ENST00000532560 GMNCA6NCL1 334 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 OR6C76A6NM76 312 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 LSM1O15116 133 aaKnown RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 SEC22BO75396 215 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ERAL1O75616 437 aaKnown RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 OR2J2O76002 312 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 HSPA4LO95757 839 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 LINC00032P0C843 101 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 CD46P15529 392 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 DDCP20711 480 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ST13P50502 369 aaKnown RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 SLC37A1P57057 533 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ABCE1P61221 599 aaKnown RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 FUT7Q11130 342 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF750Q32MQ0 723 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 C6orf163Q5TEZ5 329 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 SPINK14Q6IE38 97 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 FAM71E1Q6IPT2 247 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 FAM180AQ6UWF9 173 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 RNF111Q6ZNA4 994 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 DDIASQ8IXT1 998 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 LRRC25Q8N386 305 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 TMEM156Q8N614 296 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ANKRD42Q8N9B4 389 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 CNRIP1Q96F85 164 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 C5orf34Q96MH7 638 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF681Q96N22 645 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 RASL10BQ96S79 203 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 AGPAT4Q9NRZ5 378 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 RYDENQ9NUL5 291 aaKnown RBP13.95□□□□□ -0.18
CPSF1-208ENST00000532560 TMED5Q9Y3A6 229 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF780BQ9Y6R6 833 aa13.95□□□□□ -0.18
CPSF1-208ENST00000532560 ASH1LQ9NR48 2969 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 WWP2O00308 870 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 ITM2AO43736 263 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 LYPLA1O75608 230 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 SLC25A12O75746 678 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 CT62P0C5K7 136 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 BGNP21810 368 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 FEN1P39748 380 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 WDR4P57081 412 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 RPL38P63173 70 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 GUCY1A3Q02108 690 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 DUSP2Q05923 314 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 EBPQ15125 230 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 CEBPEQ15744 281 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 MPEG1Q2M385 716 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 PRICKLE4Q2TBC4 344 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 HHATQ5VTY9 493 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 C16orf47Q6ZP98 133 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 SLC29A4Q7RTT9 530 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 ZNF227Q86WZ6 799 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 KIRREL3Q8IZU9 778 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 CYP4Z2PQ8N1L4 340 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 VWA5B2Q8N398 1253 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 BCORP1Q8N888 145 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 TMEM178AQ8NBL3 297 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 OR7G1Q8NGA0 311 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 CDC26Q8NHZ8 85 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 GRHL3Q8TE85 626 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 DOK4Q8TEW6 326 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 ASB15Q8WXK1 588 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 EXOSC8Q96B26 276 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 TAAR6Q96RI8 345 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 CCT8L2Q96SF2 557 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 LIN28AQ9H9Z2 209 aaKnown RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 GIMAP4Q9NUV9 329 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 TAS2R7Q9NYW3 318 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 MAP10Q9P2G4 905 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 HAO1Q9UJM8 370 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 ENTPD4Q9Y227 616 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-208ENST00000532560 NBASA2RRP1 2371 aa13.94□□□□□ -0.18
CPSF1-208ENST00000532560 A8MVJ9 347 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 NME2P1O60361 137 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 VPS4BO75351 444 aa13.93□□□□□ -0.18
CPSF1-208ENST00000532560 RASAL1O95294 804 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms