RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PPP1R36Q96LQ0 422 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 AGAP4Q96P64 663 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 LMF1Q96S06 567 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 CCT8L2Q96SF2 557 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 NPAS2Q99743 824 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 ARHGAP9Q9BRR9 750 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 BRINP2Q9C0B6 783 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 WDR55Q9H6Y2 383 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-206ENST00000531480 ZNF780BQ9Y6R6 833 aa13.47□□□□□ -0.25
CPSF1-206ENST00000531480 CFAP46Q8IYW2 2715 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 TMEM200CA6NKL6 621 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 A6NL46 340 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 GABRR3A8MPY1 467 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 K7EM74 188 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 SCAMP2O15127 329 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 OR10H2O60403 315 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 SLITRK5O94991 958 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 CT62P0C5K7 136 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 PRPS1L1P21108 318 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 RPL3P39023 403 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 FEN1P39748 380 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 MRPL19P49406 292 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 CLCN2P51788 898 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 SLC37A1P57057 533 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 ZNF385BQ569K4 471 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 ZNF628Q5EBL2 1059 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 FAM47EQ6ZV65 393 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 R3HCC1LQ7Z5L2 792 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 GALNT12Q8IXK2 581 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 FAM9CQ8IZT9 166 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 KIF2BQ8N4N8 673 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 ZNF321PQ8N8H1 164 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 CEP70Q8NHQ1 597 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 C9orf43Q8TAL5 461 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 EXOSC8Q96B26 276 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 COQ8BQ96D53 544 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 RNF32Q9H0A6 362 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 SLC25A18Q9H1K4 315 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 SLAMF7Q9NQ25 335 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 MIEF1Q9NQG6 463 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 RYDENQ9NUL5 291 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 AIG1Q9NVV5 245 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 MAT2BQ9NZL9 334 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 KLHL14Q9P2G3 628 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 G3BP2Q9UN86 482 aaKnown RBP13.46□□□□□ -0.25
CPSF1-206ENST00000531480 MAPRE3Q9UPY8 281 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 ZNF451Q9Y4E5 1061 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 GPR45Q9Y5Y3 372 aa13.46□□□□□ -0.25
CPSF1-206ENST00000531480 CNTRLQ7Z7A1 2325 aa13.46□□□□□ -0.26
CPSF1-206ENST00000531480 COL6A6A6NMZ7 2263 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 HRKO00198 91 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 DYRK3O43781 588 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ALPPP05187 535 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 MPIP34949 423 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 IDH3AP50213 366 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 MFAP5Q13361 173 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 MLC1Q15049 377 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 LSM12Q3MHD2 195 aaKnown RBP13.45□□□□□ -0.26
CPSF1-206ENST00000531480 FAM180BQ6P0A1 224 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ISLR2Q6UXK2 745 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 NATD1Q8N6N6 113 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF615Q8N8J6 731 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 OR7G1Q8NGA0 311 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 CLHC1Q8NHS4 586 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 CDC26Q8NHZ8 85 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 NUBPLQ8TB37 319 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 TESCQ96BS2 214 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 PPCDCQ96CD2 204 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 AMDHD1Q96NU7 426 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF317Q96PQ6 595 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-206ENST00000531480 OR52B2Q96RD2 323 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 CCDC28BQ9BUN5 200 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 OR8D2Q9GZM6 311 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 KCNK13Q9HB14 408 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ACSS1Q9NUB1 689 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-206ENST00000531480 ENTPD4Q9Y227 616 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 TP53TG5Q9Y2B4 290 aa13.45□□□□□ -0.26
CPSF1-206ENST00000531480 GOLGA8QA0A0J9YX86 632 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 GOLGA8OA6NCC3 632 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 OR6C76A6NM76 312 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 GOLGA8NF8WBI6 632 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 PLOD2O00469 737 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 AKAP10O43572 662 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 PRKNO60260 465 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-206ENST00000531480 PLOD3O60568 738 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 LRATO95237 230 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 ZIC2O95409 532 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-206ENST00000531480 DDX5P17844 614 aaKnown RBP13.44□□□□□ -0.26
CPSF1-206ENST00000531480 TNNI3P19429 210 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 HPCAL1P37235 193 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 PGDP52209 483 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 MLF1P58340 268 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 RNF4P78317 190 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 C19orf57Q0VDD7 668 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 RAPSNQ13702 412 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 LY6DQ14210 128 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF267Q14586 743 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-206ENST00000531480 LACTB2Q53H82 288 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-206ENST00000531480 ACER2Q5QJU3 275 aa13.44□□□□□ -0.26
CPSF1-206ENST00000531480 FHL5Q5TD97 284 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms