RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TAS2R38P59533 333 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 SLC9A5Q14940 896 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 SSX1Q16384 188 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 MFSD4BQ5TF39 518 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 TMEM64Q6YI46 380 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 POC5Q8NA72 575 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 OR2A1Q8NGT9 310 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 BADQ92934 168 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 ERLEC1Q96DZ1 483 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 CAMK1GQ96NX5 476 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 INSM2Q96T92 566 aaPredicted RBP20.08■□□□□ 0.8
VPS28-205ENST00000526204 FNDC11Q9BVV2 318 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 MND1Q9BWT6 205 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 ANKMY1Q9P2S6 941 aa20.08■□□□□ 0.8
VPS28-205ENST00000526204 CRNNQ9UBG3 495 aaPredicted RBP20.08■□□□□ 0.8
VPS28-205ENST00000526204 LSM2Q9Y333 95 aaKnown RBP20.08■□□□□ 0.8
VPS28-205ENST00000526204 PRAMEF27A3QJZ7 478 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 GUCY1B2O75343 617 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 ENDOUP21128 410 aaKnown RBP20.07■□□□□ 0.8
VPS28-205ENST00000526204 NCBP2P52298 156 aaKnown RBP eCLIP20.07■□□□□ 0.85e-6■■□□□ 11.5
VPS28-205ENST00000526204 SPHARQ15513 63 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 AGBL4Q5VU57 503 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 PSRC1Q6PGN9 363 aaPredicted RBP20.07■□□□□ 0.8
VPS28-205ENST00000526204 TRIM73Q86UV7 250 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 AMER3Q8N944 861 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 BBS4Q96RK4 519 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 NUAK2Q9H093 628 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 SIAEQ9HAT2 523 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 DNAJC27Q9NZQ0 273 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 WDR37Q9Y2I8 494 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 OR1A2Q9Y585 309 aa20.07■□□□□ 0.8
VPS28-205ENST00000526204 A0A075B6Q4 140 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 IGKV1-8A0A0C4DH67 115 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 MAN2B1O00754 1011 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 HAT1O14929 419 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 OPRD1P41143 372 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 SLC13A2Q13183 592 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 PIN1Q13526 163 aaPredicted RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 MLF2Q15773 248 aaPredicted RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 SLC25A30Q5SVS4 291 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 PODNL1Q6PEZ8 512 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 SPRED2Q7Z698 418 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 SLC34A3Q8N130 599 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 FAM26EQ8N5C1 309 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 OR5D16Q8NGK9 328 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 SFXN5Q8TD22 340 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 FGF13Q92913 245 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 OSGEPL1Q9H4B0 414 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 MBNL1Q9NR56 388 aaKnown RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 PHPT1Q9NRX4 125 aaPredicted RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 LOC110117498-PIK3R3F6TDL0 507 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 MID1O15344 667 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 IGFBP1P08833 259 aaPredicted RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 ACP5P13686 325 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 PROKR2Q8NFJ6 384 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 OR2L8Q8NGY9 312 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 PIK3R3Q92569 461 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 UCN3Q969E3 161 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 WFDC6Q9BQY6 131 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 TIMM29Q9BSF4 260 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 POLDIP3Q9BY77 421 aaKnown RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 HHATLQ9HCP6 504 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 ZDHHC4Q9NPG8 344 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 SEC14L4Q9UDX3 406 aa20.06■□□□□ 0.8
VPS28-205ENST00000526204 MN1Q10571 1320 aaPredicted RBP20.06■□□□□ 0.8
VPS28-205ENST00000526204 A0A0G2JN53 185 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 GPX5O75715 221 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 CD72P21854 359 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 SEPHS1P49903 392 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 ARFIP1P53367 373 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 ZNF91Q05481 1191 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 C1DQ13901 141 aaKnown RBP20.05■□□□□ 0.8
VPS28-205ENST00000526204 CST6Q15828 149 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 ZIC1Q15915 447 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 KIAA1211LQ6NV74 962 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 ZNF793Q6ZN11 406 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 TCEANCQ8N8B7 351 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 ZNF513Q8N8E2 541 aaPredicted RBP20.05■□□□□ 0.8
VPS28-205ENST00000526204 TP53I13Q8NBR0 393 aaPredicted RBP20.05■□□□□ 0.8
VPS28-205ENST00000526204 MOAP1Q96BY2 351 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 TSSK6Q9BXA6 273 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 MVB12BQ9H7P6 319 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 C3orf14Q9HBI5 128 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 QPCTLQ9NXS2 382 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 PRKAG2Q9UGJ0 569 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 PCDHGB6Q9Y5F9 930 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 TMEM221A6NGB7 291 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 LGI1O95970 557 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 TNNI3P19429 210 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 PSMA1P25786 263 aaKnown RBP20.05■□□□□ 0.8
VPS28-205ENST00000526204 PKLRP30613 574 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 CD300CQ08708 224 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 CCDC190Q86UF4 302 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 CLIP4Q8N3C7 705 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 NANOGP1Q8N7R0 232 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 SUN3Q8TAQ9 357 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 HPS1Q92902 700 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 TRPV4Q9HBA0 871 aa20.05■□□□□ 0.8
VPS28-205ENST00000526204 MRPS30Q9NP92 439 aaKnown RBP20.05■□□□□ 0.8
VPS28-205ENST00000526204 IMP3Q9NV31 184 aaKnown RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms