RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ERP44Q9BS26 406 aa15□□□□□ -0.01
VIM-208ENST00000497849 FAM167BQ9BTA0 163 aa15□□□□□ -0.01
VIM-208ENST00000497849 COPS7BQ9H9Q2 264 aaPredicted RBP15□□□□□ -0.01
VIM-208ENST00000497849 LYRM4Q9HD34 91 aa15□□□□□ -0.01
VIM-208ENST00000497849 A0A087X1B8 175 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 SNPHO15079 494 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 H2AFYO75367 372 aaKnown RBP14.99□□□□□ -0.01
VIM-208ENST00000497849 TNFSF13O75888 250 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 MLNP12872 115 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 COX7A2P14406 83 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 GSTM2P28161 218 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 C8orf74Q6P047 294 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 TMEM64Q6YI46 380 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 UBE3DQ7Z6J8 389 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 PPIL6Q8IXY8 311 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 FBXL20Q96IG2 436 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 SERPINB12Q96P63 405 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 DGAT2Q96PD7 388 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 F2RL3Q96RI0 385 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 TM9SF2Q99805 663 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 G6PC3Q9BUM1 346 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 ANGPTL4Q9BY76 406 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 WWTR1Q9GZV5 400 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 NT5DC2Q9H857 520 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 ZNF701Q9NV72 531 aaPredicted RBP14.99□□□□□ -0.01
VIM-208ENST00000497849 ZNF226Q9NYT6 803 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 DMGDHQ9UI17 866 aaKnown RBP14.99□□□□□ -0.01
VIM-208ENST00000497849 PACSIN3Q9UKS6 424 aa14.99□□□□□ -0.01
VIM-208ENST00000497849 ESYT3A0FGR9 886 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 PHF1O43189 567 aaPredicted RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 SNX4O95219 450 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 AHSGP02765 367 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 CPN1P15169 458 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 GNAZP19086 355 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 GDF5P43026 501 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 DIO3P55073 304 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 FBXW4P57775 412 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 PDAP1Q13442 181 aaKnown RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 EBPQ15125 230 aaKnown RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 RPS6KA2Q15349 733 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 TOMM20Q15388 145 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 C18orf21Q32NC0 220 aaPredicted RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 PLEKHM3Q6ZWE6 761 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 YRDCQ86U90 279 aaKnown RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 SPPL2AQ8TCT8 520 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 WNT2BQ93097 391 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 SIGLEC10Q96LC7 697 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 UCN2Q96RP3 112 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 CLCF1Q9UBD9 225 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 FETUBQ9UGM5 382 aa14.98□□□□□ -0.01
VIM-208ENST00000497849 ZNF490Q9ULM2 529 aaPredicted RBP14.98□□□□□ -0.01
VIM-208ENST00000497849 ANKDD1BA6NHY2 528 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 RNF223E7ERA6 249 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 TP53I11O14683 189 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 TP73O15350 636 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 PRAMEF4O60810 478 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 BANF1O75531 89 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 SEC31AO94979 1220 aaKnown RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 ACTL6AO96019 429 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 CLPSP04118 112 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 RHOXF2BP0C7M4 288 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 PTPN6P29350 595 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 CCKARP32238 428 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 MAGEA3P43357 314 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 MASP1P48740 699 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 PCYT1AP49585 367 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 HERVK_113P63132 956 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 ERVK-8P63133 956 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 GUCY2DQ02846 1103 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 TEX35Q5T0J7 233 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 C10orf62Q5T681 223 aaPredicted RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 PRAMEF9Q5VWM5 478 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 C22orf34Q6ZV56 151 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 SLC29A4Q7RTT9 530 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 PACS2Q86VP3 889 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 KRT78Q8N1N4 520 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 MCUQ8NE86 351 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 FAM83FQ8NEG4 500 aaPredicted RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 RBM18Q96H35 190 aaKnown RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 PDLIM5Q96HC4 596 aaKnown RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 RHOXF2Q9BQY4 288 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 MED18Q9BUE0 208 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 ERVK-6Q9BXR3 956 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 XAB2Q9HCS7 855 aaKnown RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 RYDENQ9NUL5 291 aaKnown RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 TEX10Q9NXF1 929 aaPredicted RBP14.97□□□□□ -0.01
VIM-208ENST00000497849 GRHL1Q9NZI5 618 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 ERVK-19Q9WJR5 959 aa14.97□□□□□ -0.01
VIM-208ENST00000497849 CDC7O00311 574 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 RTCAO00442 366 aaKnown RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 GNB5O14775 395 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 MSTNO14793 375 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 WDR47O94967 919 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 ATP5A1P25705 553 aaKnown RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 HPDP32754 393 aaPredicted RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 CD79BP40259 229 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 CASP3P42574 277 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 SLC6A12P48065 614 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 KCNC1P48547 511 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms