RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PARP6Q2NL67 630 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 HKDC1Q2TB90 917 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 SLC36A3Q495N2 470 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 NADK2Q4G0N4 442 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 SPATA46Q5T0L3 261 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 NEPROQ6NW34 567 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 C3P1Q6ZMU1 363 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 Q6ZRP5 223 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 RANBP3LQ86VV4 465 aaPredicted RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 CBWD2Q8IUF1 395 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 LINC00518Q8N0U6 118 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 FAM133AQ8N9E0 248 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 OR10G7Q8NGN6 311 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 WDR36Q8NI36 951 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 MAGED4Q96JG8 741 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 F2RL3Q96RI0 385 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 EPYCQ99645 322 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 ERVK-6Q9BXR3 956 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 DCTPP1Q9H773 170 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 RMND5AQ9H871 391 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 MED20Q9H944 212 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 NMUR1Q9HB89 426 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 FARSBQ9NSD9 589 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 ATAD3AQ9NVI7 634 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 TMEM181Q9P2C4 612 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 CHMP2BQ9UQN3 213 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 RNF115Q9Y4L5 304 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 CSNK1G3Q9Y6M4 447 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 DDX49Q9Y6V7 483 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 PARD3Q8TEW0 1356 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 CLRN2A0PK11 232 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 H0YCG3 227 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 H3BTX0 84 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 NXPH4O95158 308 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 CALCAP01258 141 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 CA3P07451 260 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PRG2P13727 222 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 CYP11B1P15538 503 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PAICSP22234 425 aaKnown RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 HNRNPA2B1P22626 353 aaKnown RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PTGFRP43088 359 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PGFP49763 221 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PPIAP62937 165 aaKnown RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 RBBP4Q09028 425 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 SNTB2Q13425 540 aaKnown RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 SLC17A1Q14916 467 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 DCAF4L1Q3SXM0 396 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 ADAMTSL4-AS1Q5T5F5 129 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 STEAP1BQ6NZ63 245 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 CBLN3Q6UW01 205 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 CES3Q6UWW8 571 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 FRRS1Q6ZNA5 592 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 Q6ZSR9 355 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 GPBP1Q86WP2 473 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 GRAMD2AQ8IUY3 354 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 TBC1D10CQ8IV04 446 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 ARFGAP2Q8N6H7 521 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 ATP8B4Q8TF62 1192 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF501Q96CX3 271 aaPredicted RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PGLYRP2Q96PD5 576 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 NODALQ96S42 347 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 LRRCC1Q9C099 1032 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 SLC25A19Q9HC21 320 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 TEX10Q9NXF1 929 aaPredicted RBP4.37□□□□□ -1.71
UPF3B-203ENST00000478840 B9D1Q9UPM9 204 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 PYGO1Q9Y3Y4 419 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 MAB21L2Q9Y586 359 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 IKBKGQ9Y6K9 419 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 SYNJ2O15056 1496 aa4.37□□□□□ -1.71
UPF3B-203ENST00000478840 WDR81Q562E7 1941 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 A0A0A6YYD4 124 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 MEIOCA2RUB1 952 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ERVV-2B6SEH9 535 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 G3V2L1 256 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 MAGEC1O60732 1142 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ZFAND5O76080 213 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 GOT2P00505 430 aaKnown RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CHRNA1P02708 482 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ASNSP08243 561 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 EPB41P11171 864 aaKnown RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 SELEP16581 610 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 DRD5P21918 477 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 PSMA5P28066 241 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 FCGR2CP31995 323 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 RPL9P32969 192 aaKnown RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 TRIM23P36406 574 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 OPRL1P41146 370 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 SLC1A6P48664 564 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ACADVLP49748 655 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 GBX2P52951 348 aaPredicted RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ERVK-16P61578 105 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 NFATC2Q13469 925 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 HLA-BQ31612 363 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 POM121L1PQ3SYA9 428 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF311Q5JNZ3 666 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ATAD3BQ5T9A4 648 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 NCR3LG1Q68D85 454 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 PWWP2BQ6NUJ5 590 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CASC1Q6TDU7 716 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 RGS9BPQ6ZS82 235 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms