RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC26A1Q9H2B4 701 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ACOXLQ9NUZ1 547 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 NDUFA13Q9P0J0 144 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 ABCD2Q9UBJ2 740 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 MRTO4Q9UKD2 239 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 RPH3AQ9Y2J0 694 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 MRPS2Q9Y399 296 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 RPGRIP1LQ68CZ1 1315 aa2.35□□□□□ -2.03
CCDC88A-212ENST00000474059 RAD54L2Q9Y4B4 1467 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TRBV5-4A0A0C4DH59 114 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 YJEFN3A6XGL0 299 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 NEDD8-MDP1E9PL57 170 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 PDHXO00330 501 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 EEF2KO00418 725 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF749O43361 778 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 KIAA0513O60268 411 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 HSF2BPO75031 334 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SEC22BO75396 215 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SLC4A1P02730 911 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 FHP07954 510 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SFTPBP07988 381 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 CD1DP15813 335 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 FCGR2BP31994 310 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 FCGR2CP31995 323 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RPL9P32969 192 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ID1P41134 155 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TNFRSF4P43489 277 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 MTIF2P46199 727 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 CRYBA2P53672 197 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 GEMP55040 296 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RPL27P61353 136 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RPS27AP62979 156 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 CCZ1BP86790 482 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 CCZ1P86791 482 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 FKBP3Q00688 224 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 HSPA14Q0VDF9 509 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 WASHC5Q12768 1159 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 PDK1Q15118 436 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TRADDQ15628 312 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 UPP1Q16831 310 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 MPPE1Q53F39 396 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TEX35Q5T0J7 233 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 DCAF12Q5T6F0 453 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 NKAIN2Q5VXU1 208 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RNLSQ5VYX0 342 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RTL6Q6ICC9 239 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ITIH5Q86UX2 942 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 BATF2Q8N1L9 274 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF619Q8N2I2 560 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RELL2Q8NC24 303 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 OR6M1Q8NGM8 313 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 OR6F1Q8NGZ6 308 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 GOLGA5Q8TBA6 731 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SLC13A3Q8WWT9 602 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TCP11Q8WWU5 503 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 MRPL24Q96A35 216 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 NABP1Q96AH0 204 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ESAMQ96AP7 390 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 GPR137Q96N19 417 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ZIM3Q96PE6 472 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 RAB40CQ96S21 281 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 JPH2Q9BR39 696 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SPXQ9BT56 116 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 DDX47Q9H0S4 455 aaKnown RBP2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ABCG8Q9H221 673 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 ADNPQ9H2P0 1102 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 TNMDQ9H2S6 317 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 WDR41Q9HAD4 459 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 SYTL2Q9HCH5 934 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 GDF3Q9NR23 364 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 KCNN3Q9UGI6 736 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 FAM153AQ9UHL3 310 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 DNPEPQ9ULA0 475 aa2.34□□□□□ -2.03
CCDC88A-212ENST00000474059 KIF7Q2M1P5 1343 aa2.34□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNF724A8MTY0 619 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ARHGEF33A8MVX0 844 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 FBP2O00757 339 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 CHEK1O14757 476 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NME2P1O60361 137 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ANXA9O76027 345 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 REC8O95072 547 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ALPPP05187 535 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PGK2P07205 417 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 SERPINF2P08697 491 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ADORA3P0DMS8 318 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ALPPL2P10696 532 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PCP11498 1178 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 ALDH3B1P43353 468 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 TKTL1P51854 596 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 RIDAP52758 137 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PEX3P56589 373 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PPIAP62937 165 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 RUNX3Q13761 415 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC17A1Q14916 467 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 EXOSC7Q15024 291 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 P2RY14Q15391 338 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 GPAT3Q53EU6 434 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PARP10Q53GL7 1025 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 HERC4Q5GLZ8 1057 aaPredicted RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 CNSTQ6PJW8 725 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms