RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NSRP1Q9H0G5 558 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 CXorf21Q9HAI6 301 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 MAT2BQ9NZL9 334 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 ZIM2Q9NZV7 527 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 ERVK-11Q9UQG0 969 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 SCN2BO60939 215 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ITGAMP11215 1152 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 S1PR1P21453 382 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 NTSP30990 170 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 RPL3P39023 403 aaKnown RBP13.78□□□□□ -0.2
COL9A3-209ENST00000469852 CDK9P50750 372 aaKnown RBP13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ATP4BP51164 291 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 DUSP8Q13202 625 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 SQLEQ14534 574 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF267Q14586 743 aaPredicted RBP13.78□□□□□ -0.2
COL9A3-209ENST00000469852 SPRED3Q2MJR0 410 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 BTBD16Q32M84 506 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 TRMT12Q53H54 448 aaKnown RBP13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF628Q5EBL2 1059 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 GALNT12Q8IXK2 581 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 CLECL1Q8IZS7 167 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 OR14A16Q8NHC5 309 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF721Q8TF20 911 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 RIT1Q92963 219 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 NCLNQ969V3 563 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 CCT8L2Q96SF2 557 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 DUSP26Q9BV47 211 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 CNPPD1Q9BV87 410 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 NUDT9Q9BW91 350 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 OR8D2Q9GZM6 311 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 PRORYQ9H606 182 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 GIMAP4Q9NUV9 329 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 PPIEQ9UNP9 301 aaKnown RBP13.78□□□□□ -0.2
COL9A3-209ENST00000469852 ERVK-19Q9WJR5 959 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 KCNMB2Q9Y691 235 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 CLCA3PQ9Y6N3 262 aa13.78□□□□□ -0.2
COL9A3-209ENST00000469852 PRKNO60260 465 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 NME6O75414 186 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 C6orf47O95873 294 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 IGKV3-11P04433 115 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 PCSK2P16519 638 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 SSTR4P31391 388 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 GALNSP34059 522 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 MPIP34949 423 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 CLNS1AP54105 237 aaKnown RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 STX1BP61266 288 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 HSPB3Q12988 150 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 BIKQ13323 160 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 EXOSC7Q15024 291 aaKnown RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 TERF2Q15554 542 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 METTL21CQ5VZV1 264 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 PLAG1Q6DJT9 500 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 GK5Q6ZS86 529 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 ANKRD46Q86W74 232 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 FAM9CQ8IZT9 166 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 CPSF7Q8N684 471 aaKnown RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 MORN4Q8NDC4 146 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 B3GNT7Q8NFL0 401 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 OR7G2Q8NG99 324 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 OR8J2Q8NGG1 315 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 DAZLQ92904 295 aaKnown RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 VPS33AQ96AX1 596 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 CTHRC1Q96CG8 243 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 SENP5Q96HI0 755 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 PELOQ9BRX2 385 aaKnown RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 TRIM4Q9C037 500 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 BHLHE41Q9C0J9 482 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-209ENST00000469852 NMUR2Q9GZQ4 415 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 ING2Q9H160 280 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 SLC52A3Q9NQ40 469 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 SAR1AQ9NR31 198 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 CCDC167Q9P0B6 97 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 ZNF639Q9UID6 485 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 TRIM33Q9UPN9 1127 aa13.77□□□□□ -0.21
COL9A3-209ENST00000469852 NUP214P35658 2090 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 A0A1W2PRB8 838 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ASPDHA6ND91 283 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 SYNDIG1LA6NDD5 238 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 CBX7O95931 251 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 MC3RP41968 323 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 KIR3DL1P43629 444 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 POLR2JP52435 117 aaKnown RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 SRSF11Q05519 484 aaKnown RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 FUT7Q11130 342 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 MAP4K2Q12851 820 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 RAPSNQ13702 412 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 TBR1Q16650 682 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 TIGD2Q4W5G0 525 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 AGKQ53H12 422 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 FHL5Q5TD97 284 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 TMEM107Q6UX40 140 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 SAMD14Q8IZD0 417 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 VWA5B2Q8N398 1253 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 TMEM102Q8N9M5 508 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 GLB1L3Q8NCI6 653 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 M1APQ8TC57 530 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ZNF675Q8TD23 568 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ELP5Q8TE02 316 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 PSMF1Q92530 271 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 EXTL1Q92935 676 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms