RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 VGLL4Q14135 290 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SELPLGQ14242 412 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ITIH4Q14624 930 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PDK3Q15120 406 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PDK4Q16654 411 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SBK1Q52WX2 424 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CRB2Q5IJ48 1285 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RABGAP1LQ5R372 815 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 HACD4Q5VWC8 232 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FRMPD2BQ6IN97 320 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RGS7BPQ6MZT1 257 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ANKRD26P1Q6NSI1 321 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT3A1Q6NUS8 523 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 DPPA4Q7L190 304 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 LUZP2Q86TE4 346 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 STXBP6Q8NFX7 210 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 OR5T2Q8NGG2 359 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 OR2V1Q8NHB1 315 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SPPL2AQ8TCT8 520 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RNASE8Q8TDE3 154 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC35F5Q8WV83 523 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 NR4A3Q92570 626 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 R3HDM4Q96D70 268 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CMTM5Q96DZ9 223 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PAGE5Q96GU1 130 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 LIN37Q96GY3 246 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 IGSF21Q96ID5 467 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 HRASLS5Q96KN8 279 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 FAM210BQ96KR6 192 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RNF145Q96MT1 663 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 DEFB118Q96PH6 123 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 QKIQ96PU8 341 aaKnown RBP eCLIP4.56□□□□□ -1.682e-20■■■■■ 50.9
CCDC88A-209ENST00000456975 EBNA1BP2Q99848 306 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PKP2Q99959 881 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF559Q9BR84 538 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 C7orf50Q9BRJ6 194 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZNF2Q9BSG1 426 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CPEB1Q9BZB8 566 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 RAB17Q9H0T7 212 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MUC13Q9H3R2 512 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ABHD16BQ9H3Z7 469 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GOLPH3Q9H4A6 298 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 IL21RQ9HBE5 538 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 LPAR2Q9HBW0 351 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ENTPD7Q9NQZ7 604 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PRMT8Q9NR22 394 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 CHRAC1Q9NRG0 131 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC6A13Q9NSD5 602 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 MTCH1Q9NZJ7 389 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 GLS2Q9UI32 602 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 ZFP69BQ9UJL9 534 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT2A1Q9Y4X1 527 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0D9SFI3 127 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PLSCR5A0PG75 271 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 HACD1B0YJ81 288 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 M0QYV0 167 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 MDM4O15151 490 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 STX7O15400 261 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 MSI1O43347 362 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A9O60656 530 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 LRCH4O75427 683 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ZWINTO95229 277 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 MOCS2O96007 188 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 GRPP07492 148 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CETPP11597 493 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PSKH1P11801 424 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 F3P13726 295 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 NELFEP18615 380 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TNFRSF1AP19438 455 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 FSTP19883 344 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 FOXN2P32314 431 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CD80P33681 288 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ADPRHP54922 357 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM33P57088 247 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 NCALDP61601 193 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 COPZ1P61923 177 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 DLG1Q12959 904 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 RFX4Q33E94 735 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 OR2B11Q5JQS5 317 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 PPM1LQ5SGD2 360 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 WASHC2DQ5SRD0 308 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 MARC1Q5VT66 337 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 OR6B2Q6IFH4 312 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 EFCAB12Q6NXP0 572 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM71Q6P5X7 295 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 VWA1Q6PCB0 445 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CD300LDQ6UXZ3 194 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CYHR1Q6ZMK1 362 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ASRGL1Q7L266 308 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 LRRC70Q7Z2Q7 622 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 RD3Q7Z3Z2 195 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 SYVN1Q86TM6 617 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 THOC6Q86W42 341 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 GPBP1Q86WP2 473 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC71Q8IV32 467 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC35F3Q8IY50 421 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ADGRF4Q8IZF3 695 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 ABRAQ8N0Z2 381 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC185Q8N715 623 aa4.55□□□□□ -1.68
CCDC88A-209ENST00000456975 OR4D6Q8NGJ1 314 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms