RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 TRPM8Q7Z2W7 1104 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 VN1R5Q7Z5H4 357 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 SCUBE1Q8IWY4 988 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ZNF595Q8IYB9 648 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 NFAM1Q8NET5 270 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 B3GNT7Q8NFL0 401 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 OR2T11Q8NH01 316 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 THAP3Q8WTV1 239 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 F2RL3Q96RI0 385 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 HBEGFQ99075 208 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ACPTQ9BZG2 426 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 NMUR2Q9GZQ4 415 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 MYLK2Q9H1R3 596 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 AKTIPQ9H8T0 292 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 FBXW2Q9UKT8 454 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 CCL27Q9Y4X3 112 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 CENPEQ02224 2701 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 ATP6AP2A0A1C7CYW4 349 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 FOXE1O00358 373 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 CCL21O00585 134 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 LSM1O15116 133 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 ATP6AP2O75787 350 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 PCNAP12004 261 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 CERS1P27544 350 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 LIM2P55344 173 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 MLF1P58340 268 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 KRTCAP3Q53RY4 240 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 SGO1Q5FBB7 561 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 SPDYAQ5MJ70 313 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 ZNF468Q5VIY5 522 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 SCIMPQ6UWF3 145 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 C6orf89Q6UWU4 347 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 Q6ZSR9 355 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 CHSY3Q70JA7 882 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 CLNKQ7Z7G1 428 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 MTDHQ86UE4 582 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 SRFBP1Q8NEF9 429 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 HUS1BQ8NHY5 278 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 ERP27Q96DN0 273 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 METTL2AQ96IZ6 378 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 MAGED4Q96JG8 741 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 QRFPRQ96P65 431 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 KCNC2Q96PR1 638 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 ROGDIQ9GZN7 287 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 TSPAN10Q9H1Z9 355 aaPredicted RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 DMRT3Q9NQL9 472 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 FARSBQ9NSD9 589 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 DAPP1Q9UN19 280 aa16.77■□□□□ 0.28
SQSTM1-204ENST00000453046 TEX15Q9BXT5 2789 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 ASPDHA6ND91 283 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 SYNDIG1LA6NDD5 238 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 NPIPA5E9PKD4 350 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 SLC22A2O15244 555 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 TBX6O95947 436 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 IFNA16P05015 189 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 HLCSP50747 726 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 ATP4BP51164 291 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 HNRNPFP52597 415 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 ERVK-8P63133 956 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 MAD2L1Q13257 205 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 DDX39BQ13838 428 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 MTFR2Q6P444 385 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 SPATA19Q7Z5L4 167 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 TMEM156Q8N614 296 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 APCDD1LQ8NCL9 501 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 TMEM52Q8NDY8 209 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 VMP1Q96GC9 406 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 GPR137Q96N19 417 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 ZNF385DQ9H6B1 395 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 LRTM1Q9HBL6 345 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 SAR1AQ9NR31 198 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 NPIPA1Q9UND3 350 aa16.76■□□□□ 0.27
SQSTM1-204ENST00000453046 CROCCQ5TZA2 2017 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 MYO7BQ6PIF6 2116 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 CCT8L1PA6NM43 557 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 UBDO15205 165 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 NME2P1O60361 137 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 SLC19A2O60779 497 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 SH3BGRLO75368 114 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 NME2P22392 152 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 PPP2R1BP30154 601 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 ADSLP30566 484 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 CA7P43166 264 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 MRPL19P49406 292 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 NEK2P51955 445 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 HMGCS1Q01581 520 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 STX4Q12846 297 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 SQLEQ14534 574 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 ZSCAN26Q16670 478 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 C6orf136Q5SQH8 315 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 TMEM132CQ8N3T6 1108 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 FITM2Q8N6M3 262 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 NCLNQ969V3 563 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 CMTM7Q96FZ5 175 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 FRMD6Q96NE9 622 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 CSF3RQ99062 836 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 MTERF1Q99551 399 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 SERPINI1Q99574 410 aa16.75■□□□□ 0.27
SQSTM1-204ENST00000453046 TBCDQ9BTW9 1192 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms