RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PSORS1C1Q9UIG5 152 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 POU2F3Q9UKI9 436 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CLCA2Q9UQC9 943 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 OR2W5A6NFC9 320 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 KIAA0355O15063 1070 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 GMFGO60234 142 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CDC123O75794 336 aaPredicted RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 ARAFP10398 606 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 BSGP35613 385 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ACTR1BP42025 376 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 UGT2B15P54855 530 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ACTR1AP61163 376 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 IL18R1Q13478 541 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ZNF404Q494X3 552 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 TPRG1LQ5T0D9 272 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 DHRS4L2Q6PKH6 230 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 LHFPL3Q86UP9 236 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CHCHD4Q8N4Q1 142 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 DEFB119Q8N690 84 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ZNF557Q8N988 423 aaPredicted RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 OR5K2Q8NHB8 316 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ZBED6CLQ96FA7 236 aaPredicted RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 LRIG1Q96JA1 1093 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 MS4A8Q9BY19 250 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 POLR2J2Q9GZM3 115 aaKnown RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 SYNPO2LQ9H987 977 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 HCN2Q9UL51 889 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 PADI2Q9Y2J8 665 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 SNX4O95219 450 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 FHP07954 510 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 FUT1P19526 365 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CSNK1G2P78368 415 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CBX3Q13185 183 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 SLC35F1Q5T1Q4 408 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 KIAA1161Q6NSJ0 714 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 LAS2Q8IYD9 372 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 NRSN1Q8IZ57 195 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 LCN9Q8WX39 176 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CAMK1GQ96NX5 476 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 SERHL2Q9H4I8 314 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 CCNB1IP1Q9NPC3 277 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 QPCTLQ9NXS2 382 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 IFT52Q9Y366 437 aa12.67□□□□□ -0.38
VPS54-203ENST00000409558 ARHGEF17Q96PE2 2063 aaPredicted RBP12.67□□□□□ -0.38
VPS54-203ENST00000409558 PPP2R1BP30154 601 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 SERPINB1P30740 379 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 GPR4P46093 362 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 GPR68Q15743 365 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 SYT6Q5T7P8 510 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 WFIKKN2Q8TEU8 576 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 OTUB2Q96DC9 234 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 YIPF6Q96EC8 236 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 MAGEB10Q96LZ2 347 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 UCK2Q9BZX2 261 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 PLXNB3Q9ULL4 1909 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 PRAMEF27A3QJZ7 478 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 FAM183AA6NL82 134 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 CDK1P06493 297 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 ASGR2P07307 311 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 EPHA5P54756 1037 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 TAS2R41P59536 307 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 SLC9A5Q14940 896 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 NNATQ16517 81 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 FCRLBQ6BAA4 426 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 OR4C11Q6IEV9 310 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 PODNL1Q6PEZ8 512 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 FAM92BQ6ZTR7 304 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 Q8N9G6 341 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 DYNC2LI1Q8TCX1 351 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 PDXPQ96GD0 296 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 ZNF514Q96K75 400 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 FGF22Q9HCT0 170 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 TIGARQ9NQ88 270 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 ENTPD4Q9Y227 616 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 FCMRO60667 390 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 RPLP0P05388 317 aaKnown RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 POLR2CP19387 275 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 NTSP30990 170 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 TGFBR2P37173 567 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 XCR1P46094 333 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 FCHO2Q0JRZ9 810 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 GINS1Q14691 196 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 ZC3H12BQ5HYM0 836 aaKnown RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 C16orf62Q7Z3J2 963 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 LRRC56Q8IYG6 542 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 OR4K5Q8NGD3 323 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 SMAP2Q8WU79 429 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 PHPT1Q9NRX4 125 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 FOXE1O00358 373 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 CBFA2T3O75081 653 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 MAN2A2P49641 1150 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 C1orf61Q13536 156 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 DEFB110Q30KQ9 67 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 MSANTD1Q6ZTZ1 278 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 MTSS1LQ765P7 747 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 DEPDC4Q8N2C3 294 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 NLGN4YQ8NFZ3 816 aaPredicted RBP12.66□□□□□ -0.38
VPS54-203ENST00000409558 OR6Q1Q8NGQ2 317 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 C1GALT1C1Q96EU7 318 aa12.66□□□□□ -0.38
VPS54-203ENST00000409558 LRR1Q96L50 414 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms