RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PCDHGB5Q9Y5G0 923 aa4.58□□□□□ -1.68
USP48-202ENST00000374730 A0A0C4DFX4 3053 aa4.58□□□□□ -1.68
USP48-202ENST00000374730 PCM1Q15154 2024 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 KCNE1BA0A087WTH5 132 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 A0A087WXM4 84 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 A0A1W2PPC4 97 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 PRSS47A8MTI9 375 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 FAM220BPB1ANY3 271 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 H0YAE9 185 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 GFYI3L273 518 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 VILLO15195 856 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 TMPRSS11DO60235 418 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 STK16O75716 305 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 AP2A2O94973 939 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 OR6B1O95007 311 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SCELO95171 688 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 BMP10O95393 424 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 CLDN9O95484 217 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 POP4O95707 220 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 GUCA1CO95843 209 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 MT-CO3P00414 261 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 HPRP00739 348 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 IL6P05231 212 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 CLTBP09497 229 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 OR56A5P0C7T3 313 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 LINC00271P0C7V0 271 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 PRPS2P11908 318 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SLC2A4P14672 509 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ZNF30P17039 623 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 HOXB9P17482 250 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 IL1RNP18510 177 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 UGT1A6P19224 532 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 EPORP19235 508 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 UGT1A1P22309 533 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 UGT1A4P22310 534 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 LHCGRP22888 699 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 NFKBIAP25963 317 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 CALRP27797 417 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 HLA-FP30511 346 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 UGT1A3P35503 534 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 UGT1A5P35504 534 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ARL1P40616 181 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 RPS9P46781 194 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 GNPDA1P46926 289 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 NRIP1P48552 1158 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SPINT3P49223 89 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 RGS19P49795 217 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 STK19P49842 368 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 HNMTP50135 292 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 AP1S2P56377 157 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 OR4D2P58180 307 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 POLR2LP62875 67 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 B4GALNT1Q00973 533 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 MERTKQ12866 999 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 KCNC3Q14003 757 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SELPLGQ14242 412 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 IMPG1Q17R60 797 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SLC5A9Q2M3M2 681 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SLC36A3Q495N2 470 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 FUT11Q495W5 492 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ATP13A5Q4VNC0 1218 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 RFTN2Q52LD8 501 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 CARD16Q5EG05 197 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 LRIF1Q5T3J3 769 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 PXDC1Q5TGL8 231 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 GLYATQ6IB77 296 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 IYDQ6PHW0 289 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 BRAT1Q6PJG6 821 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 B3GNT6Q6ZMB0 384 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 RBM44Q6ZP01 1051 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 KLHDC8AQ8IYD2 350 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 L3MBTL4Q8NA19 623 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ZNF548Q8NEK5 533 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 PRSS3P2Q8NHM4 247 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 FAM110BQ8TC76 370 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ADAMTS16Q8TE57 1224 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 GTF2H4Q92759 462 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 BIRC7Q96CA5 298 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 FCRL1Q96LA6 429 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SH3GL1Q99961 368 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 YTHDF1Q9BYJ9 559 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 DPY30Q9C005 99 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 FAM83DQ9H4H8 585 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 GORASP2Q9H8Y8 452 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 CLK4Q9HAZ1 481 aaKnown RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 LRTM1Q9HBL6 345 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ASAH2Q9NR71 780 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SACM1LQ9NTJ5 587 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 OLAHQ9NV23 265 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 C1orf109Q9NX04 203 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SMPD3Q9NY59 655 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 ELOVL5Q9NYP7 299 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 PKD2L2Q9NZM6 624 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 CPNE7Q9UBL6 633 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 KLQ9UEF7 1012 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 SLC13A4Q9UKG4 626 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 ZNF490Q9ULM2 529 aaPredicted RBP4.57□□□□□ -1.68
USP48-202ENST00000374730 CORO2BQ9UQ03 480 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 TMED5Q9Y3A6 229 aa4.57□□□□□ -1.68
USP48-202ENST00000374730 LAMA2P24043 3122 aaKnown RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms