RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF280BQ86YH2 543 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ADAMTS19Q8TE59 1207 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SELPP16109 830 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 RHBDL3P58872 404 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ZC3H14Q6PJT7 736 aaKnown RBP13.3□□□□□ -0.28
CSPG4-201ENST00000308508 AGTRAPQ6RW13 159 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 ENPP7Q6UWV6 458 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 NAPRTQ6XQN6 538 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 OR2M4Q96R27 311 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SEZ6LQ9BYH1 1024 aa13.3□□□□□ -0.28
CSPG4-201ENST00000308508 SOCS2O14508 198 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 GNSP15586 552 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 IL32P24001 234 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RPP30P78346 268 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 DCUN1D3Q8IWE4 304 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF808Q8N4W9 903 aaPredicted RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 OR4K14Q8NGD5 310 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 GLIS2Q9BZE0 524 aaPredicted RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 GBAP04062 536 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MRPL41Q8IXM3 137 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MINDY1Q8N5J2 469 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM185AQ8NFB2 350 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 CLEC4CQ8WTT0 213 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ADGRB2O60241 1585 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 OR6C65A6NJZ3 312 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 TTLL8A6PVC2 850 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MAS1P04201 325 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 NAA10P41227 235 aaPredicted RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 NR4A2P43354 598 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ARHGAP40Q5TG30 622 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 UNQ6126/PRO20091Q6UXV3 157 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 TXNDC5Q8NBS9 432 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 PRODH2Q9UF12 536 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ADAM18Q9Y3Q7 739 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 IL1R2P27930 398 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MTNR1AP48039 350 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ARL6IP1Q15041 203 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 FAM69AQ5T7M9 428 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 CHCHD4Q8N4Q1 142 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 SLC35F5Q8WV83 523 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RBCK1Q9BYM8 510 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MKRN2Q9H000 416 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF442Q9H7R0 627 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 PLEKHM1Q9Y4G2 1056 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MEGF6O75095 1541 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 C11orf98E9PRG8 122 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 EOMESO95936 686 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ALPIP09923 528 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RFC2P35250 354 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 AFF3P51826 1226 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RSU1Q15404 277 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 PGM2L1Q6PCE3 622 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RELL1Q8IUW5 271 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 DTX3Q8N9I9 347 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 RNF128Q8TEB7 428 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 OR5P2Q8WZ92 322 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 HDHD5Q9BXW7 423 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 REV1Q9UBZ9 1251 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 MRPS17Q9Y2R5 130 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 OR12D1P0DN82 309 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 ADGRF1Q5T601 910 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 SFRP4Q6FHJ7 346 aaPredicted RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 C15orf52Q6ZUT6 534 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 DNAJC22Q8N4W6 341 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 FBXO22Q8NEZ5 403 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 TRMT10AQ8TBZ6 339 aaKnown RBP13.29□□□□□ -0.28
CSPG4-201ENST00000308508 TMEM125Q96AQ2 219 aa13.29□□□□□ -0.28
CSPG4-201ENST00000308508 SHOXO15266 292 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 C8orf89P0DMQ9 161 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 KCNIP4Q6PIL6 250 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CRTC1Q6UUV9 634 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CCDC71Q8IV32 467 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PGAM5Q96HS1 289 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 APOBEC3GQ9HC16 384 aaKnown RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 KLRG2A4D1S0 409 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TXNL1O43396 289 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PRAMEF2O60811 474 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 MMP20O60882 483 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 DDNO94850 711 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PRKCGP05129 697 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 GGT5P36269 586 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 MALLQ13021 153 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 PCGF3Q3KNV8 242 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 C2orf76Q3KRA6 126 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 HACD2Q6Y1H2 254 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 SLC7A13Q8TCU3 470 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 OR51B5Q9H339 312 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 NSUN3Q9H649 340 aaKnown RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 KCNIP1Q9NZI2 227 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 CSF1P09603 554 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 GDF5P43026 501 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 ZNF169Q14929 603 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 SF3A2Q15428 464 aaKnown RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 C6orf136Q5SQH8 315 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 C22orf15Q8WYQ4 148 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 LHPPQ9H008 270 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 TSPAN10Q9H1Z9 355 aaPredicted RBP13.28□□□□□ -0.28
CSPG4-201ENST00000308508 KLHL13Q9P2N7 655 aa13.28□□□□□ -0.28
CSPG4-201ENST00000308508 FGF3P11487 239 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms