RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SPATA31D4Q6ZUB0 917 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MARCH9Q86YJ5 346 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR6J1Q8NGC5 347 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR9I1Q8NGQ6 314 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 GTF2H4Q92759 462 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PLD4Q96BZ4 506 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PTCHD1Q96NR3 888 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 DHRS9Q9BPW9 319 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 RNF121Q9H920 327 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PATZ1Q9HBE1 687 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 LIN7CQ9NUP9 197 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 C14orf119Q9NWQ9 140 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OARD1Q9Y530 152 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CPED1A4D0V7 1026 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PRSS44E7EML9 344 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 hCG_2039718K7EN88 272 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 GOT2P00505 430 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 FCER1GP30273 86 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 GDI1P31150 447 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MEP1AQ16819 746 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 FAM214AQ32MH5 1076 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 LRIT3Q3SXY7 679 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CLEC6AQ6EIG7 209 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CCDC190Q86UF4 302 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CALHM3Q86XJ0 350 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 UBQLNLQ8IYU4 475 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 EID2Q8N6I1 236 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR4F6Q8NGB9 312 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR4D6Q8NGJ1 314 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 RSC1A1Q92681 617 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 HAS2Q92819 552 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 TCF25Q9BQ70 676 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 DOHHQ9BU89 302 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ENAMQ9NRM1 1142 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PCDHGA2Q9Y5H1 932 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CLCA3PQ9Y6N3 262 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 RGPD3A6NKT7 1758 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 RGPD4Q7Z3J3 1758 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 IGLV3-10A0A075B6K4 115 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 NAP1L6A6NFF2 107 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 NT5C1B-RDH14C9J2C7 533 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 INMT-MINDY4F8WBC2 141 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 IMPA2O14732 288 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SHOXO15266 292 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CDK3Q00526 305 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 GPR50Q13585 617 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MPPE1Q53F39 396 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CFAP77Q6ZQR2 320 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC44A3Q8N4M1 653 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 FAM46DQ8NEK8 389 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZFP90Q8TF47 636 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC7A6Q92536 515 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 C5orf34Q96MH7 638 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 LRFN5Q96NI6 719 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZCCHC2Q9C0B9 1178 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 TVP23BQ9NYZ1 205 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CALML5Q9NZT1 146 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PPT2Q9UMR5 302 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 AK6Q9Y3D8 172 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 MYH11P35749 1972 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 A0A0G2JLL6 359 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 ELOA3DA6NLF2 546 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 ERAL1O75616 437 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 CELF2O95319 508 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 OR8U9P0C7N5 309 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ANXA3P12429 323 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SNRPGP62308 76 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 FKBP1BP68106 108 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 TAGLNQ01995 201 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 ELOA3BQ3SY89 546 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZNF311Q5JNZ3 666 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 NKAPLQ5M9Q1 402 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CLEC12AQ5QGZ9 265 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 LIPJQ5W064 366 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 C19orf35Q6ZS72 473 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PRRT2Q7Z6L0 340 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 MCATQ8IVS2 390 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZNF101Q8IZC7 436 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ELOA3Q8NG57 546 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 FUBP1Q96AE4 644 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 ZNF764Q96H86 408 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 KCNC2Q96PR1 638 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC6A7Q99884 636 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 BTBD2Q9BX70 525 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 POTEKPQ9BYX7 375 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 ARHGAP39Q9C0H5 1083 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLIRPQ9GZT3 109 aaKnown RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC32A1Q9H598 525 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 NTN4Q9HB63 628 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 AMBNQ9NP70 447 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 SLC27A6Q9Y2P4 619 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 TMEM233B4DJY2 109 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 HHLA1C9JL84 531 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 HRH2P25021 359 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 PCGF2P35227 344 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 CTBP2P56545 445 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 BDH1Q02338 343 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 MLLT11Q13015 90 aaPredicted RBP6.13□□□□□ -1.43
VPS35-201ENST00000299138 FGFBP1Q14512 234 aa6.13□□□□□ -1.43
VPS35-201ENST00000299138 GNMTQ14749 295 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms