RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 NPC1O15118 1278 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OLFM2O95897 454 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 ELAVL4P26378 380 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 PPP2R1BP30154 601 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 SSR2P43308 183 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 LASP1Q14847 261 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 SIGIRRQ6IA17 410 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 CCDC190Q86UF4 302 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 SLC38A6Q8IZM9 456 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 ASCC1Q8N9N2 400 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 VN1R2Q8NFZ6 395 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 FYTTD1Q96QD9 318 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 TEFMQ96QE5 360 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 C17orf62Q9BQA9 187 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 XKR8Q9H6D3 395 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TMEM38AQ9H6F2 299 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 ANKRA2Q9H9E1 313 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 SEC14L4Q9UDX3 406 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 FTSJ1Q9UET6 329 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 PPIL1Q9Y3C6 166 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 MEIOCA2RUB1 952 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 PRKYO43930 277 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TSC22D2O75157 780 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 FGF18O76093 207 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 HBQ1P09105 142 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 HTR3AP46098 478 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 RNF144AP50876 292 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 SLC16A1P53985 500 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 KIAA1161Q6NSJ0 714 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 GPR155Q7Z3F1 870 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 BPHLQ86WA6 291 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 ATCAYQ86WG3 371 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 GPR32P1Q8NGA4 272 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OR4K5Q8NGD3 323 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 DOK4Q8TEW6 326 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 COL26A1Q96A83 441 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 RAD51AP1Q96B01 352 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 DACT3Q96B18 629 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 C11orf24Q96F05 449 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 TMED9Q9BVK6 235 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 ZCCHC2Q9C0B9 1178 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 RANGRFQ9HD47 186 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 MYNNQ9NPC7 610 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 SPEF1Q9Y4P9 236 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 H3BQ06 376 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 EPHX1P07099 455 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TRIQKQ629K1 86 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 PODNL1Q6PEZ8 512 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 PAMR1Q6UXH9 720 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 B3GLCTQ6Y288 498 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 REM2Q8IYK8 340 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 FLCNQ8NFG4 579 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OR8J1Q8NGP2 316 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 KLK6Q92876 244 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 UBE2E3Q969T4 207 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OMA1Q96E52 524 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OR2A14Q96R47 310 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 NELL2Q99435 816 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 RAD9AQ99638 391 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 CDCA4Q9BXL8 241 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 HDHD5Q9BXW7 423 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 OR51I1Q9H343 314 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TM7SF3Q9NS93 570 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TEX10Q9NXF1 929 aaPredicted RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 CNOT2Q9NZN8 540 aaKnown RBP11.99□□□□□ -0.49
LIG1-201ENST00000263274 FBXW2Q9UKT8 454 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 TBC1D24Q9ULP9 559 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 STUB1Q9UNE7 303 aa11.99□□□□□ -0.49
LIG1-201ENST00000263274 FAM25AB3EWG3 89 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 FAM25CB3EWG5 89 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 FAM25GB3EWG6 89 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PLPP1O14494 284 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 HOXC11O43248 304 aaPredicted RBP11.98□□□□□ -0.49
LIG1-201ENST00000263274 NTN1O95631 604 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ADAP00813 363 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SCG5P05408 212 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PSKH1P11801 424 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PRKCAP17252 672 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 WASP42768 502 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ZNF750Q32MQ0 723 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 TJAP1Q5JTD0 557 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ZNF57Q68EA5 555 aaPredicted RBP11.98□□□□□ -0.49
LIG1-201ENST00000263274 ACSM5Q6NUN0 579 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SLC9B2Q86UD5 537 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 OR4D11Q8NGI4 311 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ASB15Q8WXK1 588 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SMPDL3AQ92484 453 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ZNF689Q96CS4 500 aaPredicted RBP11.98□□□□□ -0.49
LIG1-201ENST00000263274 NUS1Q96E22 293 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SDHCQ99643 169 aaPredicted RBP11.98□□□□□ -0.49
LIG1-201ENST00000263274 EGLN3Q9H6Z9 239 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 MGAT4BQ9UQ53 548 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ATG2BQ96BY7 2078 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SCN5AQ14524 2016 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 GSAPA4D1B5 854 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ZNF33BQ06732 778 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 IL18Q14116 193 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CCDC149Q6ZUS6 474 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 GLCCI1Q86VQ1 547 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SLC35G5Q96KT7 338 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms