RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 USP6P35125 1406 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 NUP188Q5SRE5 1749 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PRR36Q9H6K5 1346 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 ZBTB7BO15156 539 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-214ENST00000637038 HMOX1P09601 288 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 IL13P35225 146 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 KLHL40Q2TBA0 621 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 PAPPAQ13219 1627 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 STRCP1A6NGW2 1772 aa4.85□□□□□ -1.63
SCN1A-214ENST00000637038 UBR2Q8IWV8 1755 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 CCT4P50991 539 aaKnown RBP4.84□□□□□ -1.63
SCN1A-214ENST00000637038 DDB1Q16531 1140 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 POLKQ9UBT6 870 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 NAP1L2Q9ULW6 460 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-214ENST00000637038 TJP1Q07157 1748 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 CHRM1P11229 460 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-214ENST00000637038 CSPP1Q1MSJ5 1256 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 VSIG10Q8N0Z9 540 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 MBIPQ9NS73 344 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 KIAA0232Q92628 1395 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 CASZ1Q86V15 1759 aa4.84□□□□□ -1.63
SCN1A-214ENST00000637038 WASLO00401 505 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 ERC2O15083 957 aa4.84□□□□□ -1.64
SCN1A-214ENST00000637038 CYP2E1P05181 493 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 FAM98CQ17RN3 349 aaKnown RBP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 TTC22Q5TAA0 569 aa4.84□□□□□ -1.64
SCN1A-214ENST00000637038 PHACTR3Q96KR7 559 aa4.84□□□□□ -1.64
SCN1A-214ENST00000637038 RRAGDQ9NQL2 400 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 BCCIPQ9P287 314 aaKnown RBP eCLIP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 CCDC61Q9Y6R9 512 aa4.84□□□□□ -1.64
SCN1A-214ENST00000637038 IBTKQ9P2D0 1353 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-214ENST00000637038 ECM29Q5VYK3 1845 aa4.84□□□□□ -1.64
SCN1A-214ENST00000637038 ELL2O00472 640 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 RRP9O43818 475 aaKnown RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 TRIM37O94972 964 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 HSP90AA2PQ14568 343 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 ANKRD44Q8N8A2 993 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 DCTPP1Q9H773 170 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 HDAC5Q9UQL6 1122 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 KDRP35968 1356 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 GNAI3P08754 354 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 HS1BP3Q53T59 392 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 C1orf115Q9H7X2 142 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 CCDC87Q9NVE4 849 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 TTC21BQ7Z4L5 1316 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 PTMAP06454 111 aaKnown RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 SRCIN1Q9C0H9 1055 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 ERBB4Q15303 1308 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 EXOC5O00471 708 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 BAG4O95429 457 aaKnown RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 MCTP1Q6DN14 999 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 ZSCAN30Q86W11 494 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 GAS2L2Q8NHY3 880 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 PKD1L3Q7Z443 1732 aa4.83□□□□□ -1.64
SCN1A-214ENST00000637038 PARP4Q9UKK3 1724 aaKnown RBP4.83□□□□□ -1.64
SCN1A-214ENST00000637038 CDK11BP21127 795 aaKnown RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 FBLN1P23142 703 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 C1QBPQ07021 282 aaKnown RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 TSPYL6Q8N831 410 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 NUDT16Q96DE0 195 aaKnown RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 MAP7D2Q96T17 732 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 SOS1Q07889 1333 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 MRC1P22897 1456 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 ROBO2Q9HCK4 1378 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 GNAI2P04899 355 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 HSP90B1P14625 803 aaKnown RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 GSPT1P15170 499 aaKnown RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 VEGFAP15692 232 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 MCM5P33992 734 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 ZFP91Q96JP5 570 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 CCDC39Q9UFE4 941 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 ATP6V1DQ9Y5K8 247 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 WDHD1O75717 1129 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-214ENST00000637038 SSFA2P28290 1259 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 TGFB2P61812 414 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 KCNH5Q8NCM2 988 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 EMILIN1Q9Y6C2 1016 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 LAMB4A4D0S4 1761 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 ACEP12821 1306 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 PITPNM2Q9BZ72 1349 aa4.82□□□□□ -1.64
SCN1A-214ENST00000637038 MTERF4Q7Z6M4 381 aaKnown RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 PLEKHM2Q8IWE5 1019 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 SYMPKQ92797 1274 aaKnown RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 EPB41L2O43491 1005 aaKnown RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 LETM1O95202 739 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 ANAPC15P60006 121 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 CCDC30Q5VVM6 783 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 KIAA1211Q6ZU35 1233 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 NME9Q86XW9 330 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 CREBZFQ9NS37 354 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 TSPYL4Q9UJ04 414 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 ZNF445P59923 1031 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 HSP90AB4PQ58FF6 505 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 SULT6B1Q6IMI4 303 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 NGDNQ8NEJ9 315 aaKnown RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 ABHD8Q96I13 439 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 THUMPD2Q9BTF0 503 aaKnown RBP4.81□□□□□ -1.64
SCN1A-214ENST00000637038 PANK2Q9BZ23 570 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 BTG4Q9NY30 223 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 PXDNLA1KZ92 1463 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms