RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ANKRD1Q15327 319 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 FAM200AQ8TCP9 573 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 HIP1O00291 1037 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 TYRO3Q06418 890 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 CCAR2Q8N163 923 aaKnown RBP14.9□□□□□ -0.02
LIG1-221ENST00000613670 DNAJC25Q9H1X3 360 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIG1-221ENST00000613670 MAP3K2Q9Y2U5 619 aa14.9□□□□□ -0.02
LIG1-221ENST00000613670 V9GYY5 206 aaPredicted RBP14.9□□□□□ -0.02
LIG1-221ENST00000613670 OSBPL3Q9H4L5 887 aa14.89□□□□□ -0.03
LIG1-221ENST00000613670 GLI2P10070 1586 aa14.89□□□□□ -0.03
LIG1-221ENST00000613670 RAD50Q92878 1312 aa14.89□□□□□ -0.03
LIG1-221ENST00000613670 RIOK3O14730 519 aaKnown RBP14.89□□□□□ -0.03
LIG1-221ENST00000613670 RUFY3Q7L099 469 aa14.89□□□□□ -0.03
LIG1-221ENST00000613670 CPLX1O14810 134 aa14.88□□□□□ -0.03
LIG1-221ENST00000613670 CWF19L2Q2TBE0 894 aaKnown RBP14.88□□□□□ -0.03
LIG1-221ENST00000613670 AMOTL2Q9Y2J4 779 aa14.88□□□□□ -0.03
LIG1-221ENST00000613670 EVI5LQ96CN4 794 aa14.87□□□□□ -0.03
LIG1-221ENST00000613670 KIAA0232Q92628 1395 aa14.87□□□□□ -0.03
LIG1-221ENST00000613670 U2AF2P26368 475 aaKnown RBP eCLIP14.87□□□□□ -0.03
LIG1-221ENST00000613670 CEBPAP49715 358 aaPredicted RBP14.87□□□□□ -0.03
LIG1-221ENST00000613670 UHRF1BP1LA0JNW5 1464 aa14.87□□□□□ -0.03
LIG1-221ENST00000613670 CCT2P78371 535 aaKnown RBP14.87□□□□□ -0.03
LIG1-221ENST00000613670 PTH1RQ03431 593 aa14.87□□□□□ -0.03
LIG1-221ENST00000613670 NMIQ13287 307 aaPredicted RBP14.87□□□□□ -0.03
LIG1-221ENST00000613670 PLEKHO1Q53GL0 409 aaPredicted RBP14.87□□□□□ -0.03
LIG1-221ENST00000613670 FAM227BQ96M60 508 aa14.87□□□□□ -0.03
LIG1-221ENST00000613670 BCL2L12Q9HB09 334 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 PYCARDQ9ULZ3 195 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 ADGRB3O60242 1522 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 MED14O60244 1454 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 ADCK5Q3MIX3 580 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 CREB3L3Q68CJ9 461 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 LARGE1O95461 756 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 LRMPQ12912 555 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 PTPN14Q15678 1187 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 TAF7LQ5H9L4 462 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 DDX19AQ9NUU7 478 aaKnown RBP14.86□□□□□ -0.03
LIG1-221ENST00000613670 CFAP45Q9UL16 551 aa14.86□□□□□ -0.03
LIG1-221ENST00000613670 LIG1P18858 919 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 YEATS2Q9ULM3 1422 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 WASHC4Q2M389 1173 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 ESCO1Q5FWF5 840 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 CDC37L1Q7L3B6 337 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 FAM177A1Q8N128 213 aaPredicted RBP14.85□□□□□ -0.03
LIG1-221ENST00000613670 STK38Q15208 465 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 LARP1Q6PKG0 1096 aaKnown RBP14.85□□□□□ -0.03
LIG1-221ENST00000613670 TTC5Q8N0Z6 440 aa14.85□□□□□ -0.03
LIG1-221ENST00000613670 DBF4Q9UBU7 674 aaPredicted RBP14.85□□□□□ -0.03
LIG1-221ENST00000613670 ERICH4A6NGS2 130 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 ME3Q16798 604 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 VPS53Q5VIR6 699 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 SYNE3Q6ZMZ3 975 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 CREBRFQ8IUR6 639 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.84□□□□□ -0.03
LIG1-221ENST00000613670 MTMR6Q9Y217 621 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 PPRC1Q5VV67 1664 aaKnown RBP14.84□□□□□ -0.03
LIG1-221ENST00000613670 RGS12O14924 1447 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 STK11IPQ8N1F8 1099 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 KLHDC4Q8TBB5 520 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 BRF1Q92994 677 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 NLRP2Q9NX02 1062 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 CFAP74Q9C0B2 1584 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 SMAP1Q8IYB5 467 aaPredicted RBP14.84□□□□□ -0.03
LIG1-221ENST00000613670 IL17REQ8NFR9 667 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 NAT10Q9H0A0 1025 aaKnown RBP14.84□□□□□ -0.03
LIG1-221ENST00000613670 TOMM22Q9NS69 142 aa14.84□□□□□ -0.03
LIG1-221ENST00000613670 SETBP1Q9Y6X0 1596 aa14.83□□□□□ -0.03
LIG1-221ENST00000613670 IL25Q9H293 177 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 BIN1O00499 593 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 SSH3Q8TE77 659 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 METP08581 1390 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 ADGRB1O14514 1584 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 FLT4P35916 1363 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 CCDC171Q6TFL3 1326 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 PRR36Q9H6K5 1346 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 TTC6Q86TZ1 520 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 CEP57L1Q8IYX8 460 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 LGR6Q9HBX8 967 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 NDUFB9Q9Y6M9 179 aa14.83□□□□□ -0.04
LIG1-221ENST00000613670 MNS1Q8NEH6 495 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 STAP2Q9UGK3 403 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 APPP05067 770 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 ISM2Q6H9L7 571 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 CBX8Q9HC52 389 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 ABCC3O15438 1527 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 ATP10DQ9P241 1426 aa14.82□□□□□ -0.04
LIG1-221ENST00000613670 PIP4K2AP48426 406 aaPredicted RBP14.82□□□□□ -0.04
LIG1-221ENST00000613670 ZNF396Q96N95 335 aaPredicted RBP14.82□□□□□ -0.04
LIG1-221ENST00000613670 LSG1Q9H089 658 aaKnown RBP14.82□□□□□ -0.04
LIG1-221ENST00000613670 KIAA1210Q9ULL0 1709 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 KCNQ3O43525 872 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 DDX46Q7L014 1031 aaKnown RBP14.81□□□□□ -0.04
LIG1-221ENST00000613670 RAB11FIP4Q86YS3 637 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 EDC3Q96F86 508 aaKnown RBP14.81□□□□□ -0.04
LIG1-221ENST00000613670 CGNQ9P2M7 1197 aaKnown RBP14.81□□□□□ -0.04
LIG1-221ENST00000613670 CEP135Q66GS9 1140 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 CCAR1Q8IX12 1150 aaKnown RBP14.81□□□□□ -0.04
LIG1-221ENST00000613670 RAPGEF4Q8WZA2 1011 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 NEK1Q96PY6 1258 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms