RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 GNAI3P08754 354 aa14.6□□□□□ -0.07
VRK3-223ENST00000601341 NEXNQ0ZGT2 675 aa14.6□□□□□ -0.07
VRK3-223ENST00000601341 ITPK1Q13572 414 aa14.6□□□□□ -0.07
VRK3-223ENST00000601341 DAXXQ9UER7 740 aaPredicted RBP14.6□□□□□ -0.07
VRK3-223ENST00000601341 ALDH1L1O75891 902 aa14.59□□□□□ -0.07
VRK3-223ENST00000601341 LINS1Q8NG48 757 aa14.59□□□□□ -0.07
VRK3-223ENST00000601341 MEIS3Q99687 375 aa14.59□□□□□ -0.07
VRK3-223ENST00000601341 METTL22Q9BUU2 404 aaPredicted RBP14.59□□□□□ -0.07
VRK3-223ENST00000601341 CCDC87Q9NVE4 849 aa14.59□□□□□ -0.07
VRK3-223ENST00000601341 IL6STP40189 918 aaPredicted RBP14.58□□□□□ -0.08
VRK3-223ENST00000601341 CRKLP46109 303 aaKnown RBP14.58□□□□□ -0.08
VRK3-223ENST00000601341 NBR1Q14596 966 aa14.58□□□□□ -0.08
VRK3-223ENST00000601341 TTLL7Q6ZT98 887 aa14.58□□□□□ -0.08
VRK3-223ENST00000601341 ZBTB1Q9Y2K1 713 aa14.58□□□□□ -0.08
VRK3-223ENST00000601341 ZNF330Q9Y3S2 320 aaPredicted RBP14.58□□□□□ -0.08
VRK3-223ENST00000601341 DEKP35659 375 aaKnown RBP14.57□□□□□ -0.08
VRK3-223ENST00000601341 INTS5Q6P9B9 1019 aaKnown RBP14.57□□□□□ -0.08
VRK3-223ENST00000601341 BRWD3Q6RI45 1802 aa14.57□□□□□ -0.08
VRK3-223ENST00000601341 TRIM37O94972 964 aa14.57□□□□□ -0.08
VRK3-223ENST00000601341 KIF6Q6ZMV9 814 aa14.57□□□□□ -0.08
VRK3-223ENST00000601341 USP44Q9H0E7 712 aa14.57□□□□□ -0.08
VRK3-223ENST00000601341 TJP1Q07157 1748 aa14.56□□□□□ -0.08
VRK3-223ENST00000601341 BTAF1O14981 1849 aa14.56□□□□□ -0.08
VRK3-223ENST00000601341 GNAI2P04899 355 aa14.56□□□□□ -0.08
VRK3-223ENST00000601341 C1orf115Q9H7X2 142 aa14.56□□□□□ -0.08
VRK3-223ENST00000601341 CCNL1Q9UK58 526 aaPredicted RBP14.56□□□□□ -0.08
VRK3-223ENST00000601341 CICQ96RK0 1608 aaPredicted RBP14.56□□□□□ -0.08
VRK3-223ENST00000601341 ZNF831Q5JPB2 1677 aa14.56□□□□□ -0.08
VRK3-223ENST00000601341 IBTKQ9P2D0 1353 aaPredicted RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 SBF2Q86WG5 1849 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 UBTFL1P0CB47 393 aaPredicted RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 RPAP2Q8IXW5 612 aaPredicted RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 MYD88Q99836 296 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 HDAC5Q9UQL6 1122 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 IGKV5-2P06315 115 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 EIF5P55010 431 aaKnown RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 CWF19L2Q2TBE0 894 aaKnown RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 ARXQ96QS3 562 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 ZBTB3Q9H5J0 574 aa14.55□□□□□ -0.08
VRK3-223ENST00000601341 C9orf78Q9NZ63 289 aaPredicted RBP14.55□□□□□ -0.08
VRK3-223ENST00000601341 NEURL1BA8MQ27 555 aa14.54□□□□□ -0.08
VRK3-223ENST00000601341 RC3H1Q5TC82 1133 aaKnown RBP14.54□□□□□ -0.08
VRK3-223ENST00000601341 LINC00116Q8NCU8 138 aa14.54□□□□□ -0.08
VRK3-223ENST00000601341 UPF2Q9HAU5 1272 aaKnown RBP14.54□□□□□ -0.08
VRK3-223ENST00000601341 MAP3K15Q6ZN16 1313 aa14.54□□□□□ -0.08
VRK3-223ENST00000601341 CNTNAP4Q9C0A0 1308 aa14.54□□□□□ -0.08
VRK3-223ENST00000601341 SOCS7O14512 581 aa14.53□□□□□ -0.08
VRK3-223ENST00000601341 KCNQ4P56696 695 aa14.53□□□□□ -0.08
VRK3-223ENST00000601341 SMC5Q8IY18 1101 aa14.53□□□□□ -0.08
VRK3-223ENST00000601341 PDZRN3Q9UPQ7 1066 aa14.53□□□□□ -0.08
VRK3-223ENST00000601341 N4BP2Q86UW6 1770 aaPredicted RBP14.53□□□□□ -0.08
VRK3-223ENST00000601341 ERVV-1B6SEH8 477 aa14.52□□□□□ -0.08
VRK3-223ENST00000601341 GRM8O00222 908 aa14.52□□□□□ -0.08
VRK3-223ENST00000601341 NBPF7P0C2Y1 421 aaPredicted RBP14.52□□□□□ -0.08
VRK3-223ENST00000601341 HMGB2P26583 209 aaKnown RBP14.52□□□□□ -0.08
VRK3-223ENST00000601341 GCKRQ14397 625 aa14.52□□□□□ -0.08
VRK3-223ENST00000601341 SLC27A3Q5K4L6 730 aa14.52□□□□□ -0.08
VRK3-223ENST00000601341 DZIP3Q86Y13 1208 aaKnown RBP14.52□□□□□ -0.08
VRK3-223ENST00000601341 ANKRD44Q8N8A2 993 aa14.52□□□□□ -0.08
VRK3-223ENST00000601341 ATP5J2-PTCD1G3V325 749 aa14.52□□□□□ -0.09
VRK3-223ENST00000601341 CEP85Q6P2H3 762 aa14.52□□□□□ -0.09
VRK3-223ENST00000601341 GIGYF2Q6Y7W6 1299 aaKnown RBP14.52□□□□□ -0.09
VRK3-223ENST00000601341 UTYO14607 1347 aa14.52□□□□□ -0.09
VRK3-223ENST00000601341 A0A087WZG4 1122 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 HMMRO75330 724 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 TCIRG1Q13488 830 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 BECN1Q14457 450 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 HSP90AB3PQ58FF7 597 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 SIRT2Q8IXJ6 389 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 CCDC191Q8NCU4 936 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 LRRFIP2Q9Y608 721 aaKnown RBP14.51□□□□□ -0.09
VRK3-223ENST00000601341 EP400Q96L91 3159 aa14.51□□□□□ -0.09
VRK3-223ENST00000601341 TRIM28Q13263 835 aaKnown RBP14.5□□□□□ -0.09
VRK3-223ENST00000601341 TBC1D2BQ9UPU7 963 aa14.5□□□□□ -0.09
VRK3-223ENST00000601341 PLSCR1O15162 318 aa14.5□□□□□ -0.09
VRK3-223ENST00000601341 RPS6KA4O75676 772 aa14.5□□□□□ -0.09
VRK3-223ENST00000601341 ISCA1Q9BUE6 129 aa14.5□□□□□ -0.09
VRK3-223ENST00000601341 CWC25Q9NXE8 425 aaPredicted RBP14.5□□□□□ -0.09
VRK3-223ENST00000601341 RREB1Q92766 1687 aa14.5□□□□□ -0.09
VRK3-223ENST00000601341 LY75O60449 1722 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 COL5A3P25940 1745 aaPredicted RBP14.49□□□□□ -0.09
VRK3-223ENST00000601341 ARFGEF2Q9Y6D5 1785 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 APBA3O96018 575 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 GCC1Q96CN9 775 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 LRRC4BQ9NT99 713 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 COL15A1P39059 1388 aa14.49□□□□□ -0.09
VRK3-223ENST00000601341 GNPATO15228 680 aa14.48□□□□□ -0.09
VRK3-223ENST00000601341 ATP8B2P98198 1209 aa14.48□□□□□ -0.09
VRK3-223ENST00000601341 HLFQ16534 295 aa14.48□□□□□ -0.09
VRK3-223ENST00000601341 TBC1D32Q96NH3 1257 aa14.48□□□□□ -0.09
VRK3-223ENST00000601341 RTCBQ9Y3I0 505 aaKnown RBP14.48□□□□□ -0.09
VRK3-223ENST00000601341 MYH14Q7Z406 1995 aaKnown RBP14.47□□□□□ -0.09
VRK3-223ENST00000601341 NUP188Q5SRE5 1749 aa14.47□□□□□ -0.09
VRK3-223ENST00000601341 CAMTA2O94983 1202 aa14.47□□□□□ -0.09
VRK3-223ENST00000601341 TXNRD1Q16881 649 aa14.47□□□□□ -0.09
VRK3-223ENST00000601341 ILDR2Q71H61 639 aa14.47□□□□□ -0.09
VRK3-223ENST00000601341 AK7Q96M32 723 aa14.47□□□□□ -0.09
VRK3-223ENST00000601341 H7C1W4 665 aa14.46□□□□□ -0.09
VRK3-223ENST00000601341 RGL2O15211 777 aa14.46□□□□□ -0.09
VRK3-223ENST00000601341 UBE3BQ7Z3V4 1068 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms