RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 CCDC173Q0VFZ6 552 aa20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 LINS1Q8NG48 757 aa20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 IL2RBP14784 551 aa20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 NUTM1Q86Y26 1132 aa20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 PPP1R9BQ96SB3 815 aa20.81■□□□□ 0.92
SHKBP1-205ENST00000594973 C5P01031 1676 aa20.8■□□□□ 0.92
SHKBP1-205ENST00000594973 MRC1P22897 1456 aa20.8■□□□□ 0.92
SHKBP1-205ENST00000594973 RBM42Q9BTD8 480 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-205ENST00000594973 RHPN1Q8TCX5 695 aa20.79■□□□□ 0.92
SHKBP1-205ENST00000594973 CARD10Q9BWT7 1032 aa20.79■□□□□ 0.92
SHKBP1-205ENST00000594973 TRIM6-TRIM34B2RNG4 842 aa20.79■□□□□ 0.92
SHKBP1-205ENST00000594973 RAB11FIP3O75154 756 aa20.79■□□□□ 0.92
SHKBP1-205ENST00000594973 ZSCAN30Q86W11 494 aa20.79■□□□□ 0.92
SHKBP1-205ENST00000594973 GRM8O00222 908 aa20.78■□□□□ 0.92
SHKBP1-205ENST00000594973 OS9Q13438 667 aaPredicted RBP20.78■□□□□ 0.92
SHKBP1-205ENST00000594973 RILPL2Q969X0 211 aa20.78■□□□□ 0.92
SHKBP1-205ENST00000594973 IGKV5-2P06315 115 aa20.77■□□□□ 0.92
SHKBP1-205ENST00000594973 DDIT3P35638 169 aa20.77■□□□□ 0.92
SHKBP1-205ENST00000594973 NEXNQ0ZGT2 675 aa20.77■□□□□ 0.92
SHKBP1-205ENST00000594973 MYD88Q99836 296 aa20.77■□□□□ 0.92
SHKBP1-205ENST00000594973 USP26Q9BXU7 913 aa20.77■□□□□ 0.92
SHKBP1-205ENST00000594973 KIF1BPQ96EK5 621 aa20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 SUCLG2Q96I99 432 aa20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 CIZ1Q9ULV3 898 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 CD2BP2O95400 341 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 ANKRD13DQ6ZTN6 518 aa20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 MTERF4Q7Z6M4 381 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 STAP2Q9UGK3 403 aa20.76■□□□□ 0.91
SHKBP1-205ENST00000594973 LRP10Q7Z4F1 713 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 SNX21Q969T3 373 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 PA2G4Q9UQ80 394 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 ABCA3Q99758 1704 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 MTX1Q13505 466 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 GAS2L3Q86XJ1 694 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 BICC1Q9H694 974 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 BTG4Q9NY30 223 aa20.75■□□□□ 0.91
SHKBP1-205ENST00000594973 PARP4Q9UKK3 1724 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 PTCD1O75127 700 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 RBM10P98175 930 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 UNC5CLQ8IV45 518 aa20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 SMAP1Q8IYB5 467 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 KAZALD1Q96I82 304 aa20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 GBP4Q96PP9 640 aa20.74■□□□□ 0.91
SHKBP1-205ENST00000594973 NEURL1BA8MQ27 555 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 ERC2O15083 957 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 HSP90AB4PQ58FF6 505 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 METTL22Q9BUU2 404 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 HDAC5Q9UQL6 1122 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 ERVV-2B6SEH9 535 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 REC8O95072 547 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 MAP4K4O95819 1239 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 NHSL1Q5SYE7 1610 aa20.73■□□□□ 0.91
SHKBP1-205ENST00000594973 GCKRQ14397 625 aa20.72■□□□□ 0.91
SHKBP1-205ENST00000594973 HS1BP3Q53T59 392 aa20.72■□□□□ 0.91
SHKBP1-205ENST00000594973 JARID2Q92833 1246 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-205ENST00000594973 UTYO14607 1347 aa20.71■□□□□ 0.91
SHKBP1-205ENST00000594973 NKX1-1Q15270 411 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-205ENST00000594973 ANP32BQ92688 251 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-205ENST00000594973 MSNP26038 577 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-205ENST00000594973 ATP5J2-PTCD1G3V325 749 aa20.7■□□□□ 0.9
SHKBP1-205ENST00000594973 AOX1Q06278 1338 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 CHMLP26374 656 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 PI4K2BQ8TCG2 481 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 FOXD4L1Q9NU39 408 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 NBPF26B4DH59 902 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 NBPF14Q5TI25 921 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 NBPF10Q6P3W6 841 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 CLASRPQ8N2M8 674 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 NBPF15Q8N660 670 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 ESYT1Q9BSJ8 1104 aa20.69■□□□□ 0.9
SHKBP1-205ENST00000594973 SIL1Q9H173 461 aa20.68■□□□□ 0.9
SHKBP1-205ENST00000594973 K7ELQ4 463 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 A1BGP04217 495 aa20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 RABEP1Q15276 862 aa20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 TNPO1Q92973 898 aaKnown RBP20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 EPHA10Q5JZY3 1008 aa20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 KLHDC4Q8TBB5 520 aa20.67■□□□□ 0.9
SHKBP1-205ENST00000594973 NASPP49321 788 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 GLI3P10071 1580 aa20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 RAB3GAP1Q15042 981 aa20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 UBE3BQ7Z3V4 1068 aa20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 ANO2Q9NQ90 1003 aa20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 TMOD3Q9NYL9 352 aa20.66■□□□□ 0.9
SHKBP1-205ENST00000594973 ERC1Q8IUD2 1116 aa20.65■□□□□ 0.9
SHKBP1-205ENST00000594973 PLBD2Q8NHP8 589 aa20.65■□□□□ 0.9
SHKBP1-205ENST00000594973 G3BP1Q13283 466 aaKnown RBP eCLIP20.65■□□□□ 0.9
SHKBP1-205ENST00000594973 TTLL7Q6ZT98 887 aa20.65■□□□□ 0.9
SHKBP1-205ENST00000594973 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-205ENST00000594973 A0A087WZG4 1122 aa20.64■□□□□ 0.89
SHKBP1-205ENST00000594973 ZNF500O60304 480 aaPredicted RBP20.64■□□□□ 0.89
SHKBP1-205ENST00000594973 IFIT2P09913 472 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-205ENST00000594973 AACSQ86V21 672 aa20.64■□□□□ 0.89
SHKBP1-205ENST00000594973 TUBGCP6Q96RT7 1819 aa20.63■□□□□ 0.89
SHKBP1-205ENST00000594973 SASH1O94885 1247 aa20.63■□□□□ 0.89
SHKBP1-205ENST00000594973 IL25Q9H293 177 aa20.63■□□□□ 0.89
SHKBP1-205ENST00000594973 KCPQ6ZWJ8 1503 aa20.63■□□□□ 0.89
SHKBP1-205ENST00000594973 SHANK3Q9BYB0 1731 aa20.63■□□□□ 0.89
SHKBP1-205ENST00000594973 ROBO1Q9Y6N7 1651 aa20.62■□□□□ 0.89
SHKBP1-205ENST00000594973 DYNC1I1O14576 645 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms