RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 LY75O60449 1722 aa10.6□□□□□ -0.71
SMAD4-204ENST00000586253 NUP188Q5SRE5 1749 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 TK2O00142 265 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 HMGB2P26583 209 aaKnown RBP10.59□□□□□ -0.71
SMAD4-204ENST00000586253 CABP4P57796 275 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 NFE2L2Q16236 605 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 OXER1Q8TDS5 423 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 PNISRQ8TF01 805 aaKnown RBP10.59□□□□□ -0.71
SMAD4-204ENST00000586253 CRISPLD2Q9H0B8 497 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 SLC52A2Q9HAB3 445 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 CEMIPQ8WUJ3 1361 aa10.59□□□□□ -0.71
SMAD4-204ENST00000586253 DLG5Q8TDM6 1919 aa10.58□□□□□ -0.72
SMAD4-204ENST00000586253 PALLDQ8WX93 1383 aa10.58□□□□□ -0.72
SMAD4-204ENST00000586253 SLC27A3Q5K4L6 730 aa10.58□□□□□ -0.72
SMAD4-204ENST00000586253 RTF1Q92541 710 aaKnown RBP10.58□□□□□ -0.72
SMAD4-204ENST00000586253 LGR6Q9HBX8 967 aa10.58□□□□□ -0.72
SMAD4-204ENST00000586253 SIPA1L3O60292 1781 aaPredicted RBP10.57□□□□□ -0.72
SMAD4-204ENST00000586253 CCER2I3L3R5 266 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 TXNRD1Q16881 649 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 NFATC2IPQ8NCF5 419 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 IL17REQ8NFR9 667 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 PAPPAQ13219 1627 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 ZNF831Q5JPB2 1677 aa10.57□□□□□ -0.72
SMAD4-204ENST00000586253 TMPOP42166 694 aaKnown RBP10.56□□□□□ -0.72
SMAD4-204ENST00000586253 LMOD3Q0VAK6 560 aa10.56□□□□□ -0.72
SMAD4-204ENST00000586253 TEFQ10587 303 aa10.56□□□□□ -0.72
SMAD4-204ENST00000586253 ATG3Q9NT62 314 aa10.56□□□□□ -0.72
SMAD4-204ENST00000586253 ASAP1Q9ULH1 1129 aa10.56□□□□□ -0.72
SMAD4-204ENST00000586253 NBR1Q14596 966 aa10.55□□□□□ -0.72
SMAD4-204ENST00000586253 CCDC146Q8IYE0 955 aa10.55□□□□□ -0.72
SMAD4-204ENST00000586253 CICQ96RK0 1608 aaPredicted RBP10.55□□□□□ -0.72
SMAD4-204ENST00000586253 LOC102724428A0A0B4J2F2 783 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 SIK1P57059 783 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 RIPK4P57078 832 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 NBPF14Q5TI25 921 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 MCM10Q7L590 875 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 LRRC4BQ9NT99 713 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 CCNL1Q9UK58 526 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-204ENST00000586253 UBR2Q8IWV8 1755 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 TAF1LQ8IZX4 1826 aa10.54□□□□□ -0.72
SMAD4-204ENST00000586253 C5P01031 1676 aa10.53□□□□□ -0.72
SMAD4-204ENST00000586253 KCPQ6ZWJ8 1503 aa10.53□□□□□ -0.72
SMAD4-204ENST00000586253 APAF1O14727 1248 aa10.52□□□□□ -0.73
SMAD4-204ENST00000586253 GTPBP6O43824 516 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-204ENST00000586253 DCTN1Q14203 1278 aa10.52□□□□□ -0.73
SMAD4-204ENST00000586253 PPP4R3BQ5MIZ7 849 aa10.52□□□□□ -0.73
SMAD4-204ENST00000586253 ZNF790Q6PG37 636 aa10.52□□□□□ -0.73
SMAD4-204ENST00000586253 HCSTQ9UBK5 93 aa10.52□□□□□ -0.73
SMAD4-204ENST00000586253 QSER1Q2KHR3 1735 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 BTBD11A6QL63 1104 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 TBC1D12O60347 775 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 ATP6V1AP38606 617 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 TAF7Q15545 349 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-204ENST00000586253 TTC5Q8N0Z6 440 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 ANO8Q9HCE9 1232 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-204ENST00000586253 BABAM1Q9NWV8 329 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 STK32BQ9NY57 414 aa10.51□□□□□ -0.73
SMAD4-204ENST00000586253 RRP7AQ9Y3A4 280 aaKnown RBP10.51□□□□□ -0.73
SMAD4-204ENST00000586253 C4BP0C0L5 1744 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 COL5A3P25940 1745 aaPredicted RBP10.5□□□□□ -0.73
SMAD4-204ENST00000586253 KDM3BQ7LBC6 1761 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 PTCD1O75127 700 aaKnown RBP10.5□□□□□ -0.73
SMAD4-204ENST00000586253 SLC39A6Q13433 755 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 NEUROD2Q15784 382 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 SLC15A2Q16348 729 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 CCDC27Q2M243 656 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 FAM9BQ8IZU0 186 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 NGEFQ8N5V2 710 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 TJP1Q07157 1748 aa10.5□□□□□ -0.73
SMAD4-204ENST00000586253 KCNQ4P56696 695 aa10.49□□□□□ -0.73
SMAD4-204ENST00000586253 CALD1Q05682 793 aaKnown RBP10.49□□□□□ -0.73
SMAD4-204ENST00000586253 ITPK1Q13572 414 aa10.49□□□□□ -0.73
SMAD4-204ENST00000586253 FMNL2Q96PY5 1086 aa10.49□□□□□ -0.73
SMAD4-204ENST00000586253 SLC4A9Q96Q91 983 aa10.49□□□□□ -0.73
SMAD4-204ENST00000586253 THUMPD2Q9BTF0 503 aaKnown RBP10.49□□□□□ -0.73
SMAD4-204ENST00000586253 ZNF827Q17R98 1081 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 PPP1R15BQ5SWA1 713 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 RC3H1Q5TC82 1133 aaKnown RBP10.48□□□□□ -0.73
SMAD4-204ENST00000586253 LINC00116Q8NCU8 138 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 ZNF496Q96IT1 587 aaPredicted RBP10.48□□□□□ -0.73
SMAD4-204ENST00000586253 PLA2G2EQ9NZK7 142 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 CNTNAP4Q9C0A0 1308 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 HEG1Q9ULI3 1381 aa10.48□□□□□ -0.73
SMAD4-204ENST00000586253 TUBGCP6Q96RT7 1819 aa10.47□□□□□ -0.73
SMAD4-204ENST00000586253 R3HDM1Q15032 1099 aaKnown RBP10.47□□□□□ -0.73
SMAD4-204ENST00000586253 TEX13AQ9BXU3 409 aaPredicted RBP10.47□□□□□ -0.73
SMAD4-204ENST00000586253 VPS9D1Q9Y2B5 631 aa10.47□□□□□ -0.73
SMAD4-204ENST00000586253 CASZ1Q86V15 1759 aa10.47□□□□□ -0.73
SMAD4-204ENST00000586253 UBR3Q6ZT12 1888 aa10.47□□□□□ -0.73
SMAD4-204ENST00000586253 CHL1O00533 1208 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 KCNQ3O43525 872 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 FOSBP53539 338 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 WWC1Q8IX03 1113 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 DNAJC10Q8IXB1 793 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 FLAD1Q8NFF5 587 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 AK7Q96M32 723 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 KCNK17Q96T54 332 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 IFT57Q9NWB7 429 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 TFCP2L1Q9NZI6 479 aa10.46□□□□□ -0.73
SMAD4-204ENST00000586253 TSPYL4Q9UJ04 414 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms