RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 CWC22Q9HCG8 908 aaKnown RBP16.44■□□□□ 0.22
ITGB4-207ENST00000580542 RGPD5Q99666 1765 aa16.44■□□□□ 0.22
ITGB4-207ENST00000580542 ZNF853P0CG23 659 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 SULT6B1Q6IMI4 303 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 FAM208AQ9UK61 1670 aaKnown RBP16.43■□□□□ 0.22
ITGB4-207ENST00000580542 MMP14P50281 582 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 UVSSAQ2YD98 709 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 MBIPQ9NS73 344 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 IFT57Q9NWB7 429 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 LRRC37A3O60309 1634 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 FAM184AQ8NB25 1140 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 PYCARDQ9ULZ3 195 aa16.43■□□□□ 0.22
ITGB4-207ENST00000580542 ELL2O00472 640 aaPredicted RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 CLGNO14967 610 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 PHF14O94880 888 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 HNRNPH2P55795 449 aaKnown RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 GNAI1P63096 354 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 SYCP1Q15431 976 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 DDX17Q92841 729 aaKnown RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 RSPH14Q9UHP6 348 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 AHDC1Q5TGY3 1603 aaPredicted RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 CPDO75976 1380 aa16.42■□□□□ 0.22
ITGB4-207ENST00000580542 NAA30Q147X3 362 aaPredicted RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 ZGPATQ8N5A5 531 aaKnown RBP16.42■□□□□ 0.22
ITGB4-207ENST00000580542 RABEP1Q15276 862 aa16.41■□□□□ 0.22
ITGB4-207ENST00000580542 LOC102724159A0A0B4J2E5 919 aa16.41■□□□□ 0.22
ITGB4-207ENST00000580542 RAD51AP2Q09MP3 1159 aa16.41■□□□□ 0.22
ITGB4-207ENST00000580542 PWP2Q15269 919 aaKnown RBP16.41■□□□□ 0.22
ITGB4-207ENST00000580542 MYCNP04198 464 aaPredicted RBP16.4■□□□□ 0.22
ITGB4-207ENST00000580542 ZDHHC9Q9Y397 364 aa16.4■□□□□ 0.22
ITGB4-207ENST00000580542 PSEN1P49768 467 aa16.4■□□□□ 0.22
ITGB4-207ENST00000580542 ROBO1Q9Y6N7 1651 aa16.4■□□□□ 0.22
ITGB4-207ENST00000580542 LMOD3Q0VAK6 560 aa16.39■□□□□ 0.21
ITGB4-207ENST00000580542 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.21
ITGB4-207ENST00000580542 C8orf58Q8NAV2 365 aa16.39■□□□□ 0.21
ITGB4-207ENST00000580542 TMX1Q9H3N1 280 aa16.39■□□□□ 0.21
ITGB4-207ENST00000580542 GTF2A1P52655 376 aaPredicted RBP16.38■□□□□ 0.21
ITGB4-207ENST00000580542 COL22A1Q8NFW1 1626 aaPredicted RBP16.38■□□□□ 0.21
ITGB4-207ENST00000580542 PLEKHG2Q9H7P9 1386 aa16.38■□□□□ 0.21
ITGB4-207ENST00000580542 SMTNL1A8MU46 457 aa16.38■□□□□ 0.21
ITGB4-207ENST00000580542 GSPT1P15170 499 aaKnown RBP16.38■□□□□ 0.21
ITGB4-207ENST00000580542 CDC45O75419 566 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 KCNF1Q9H3M0 494 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 ST7Q9NRC1 585 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 FAM193AP78312 1265 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 SPC24Q8NBT2 197 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 CCDC112Q8NEF3 446 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 CFAP44Q96MT7 982 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 NOL10Q9BSC4 688 aaKnown RBP16.37■□□□□ 0.21
ITGB4-207ENST00000580542 RASSF4Q9H2L5 321 aa16.37■□□□□ 0.21
ITGB4-207ENST00000580542 C16orf45Q96MC5 204 aaPredicted RBP16.36■□□□□ 0.21
ITGB4-207ENST00000580542 API5Q9BZZ5 524 aaKnown RBP16.36■□□□□ 0.21
ITGB4-207ENST00000580542 FAM83GA6ND36 823 aa16.36■□□□□ 0.21
ITGB4-207ENST00000580542 TPM3P06753 285 aa16.36■□□□□ 0.21
ITGB4-207ENST00000580542 HCLS1P14317 486 aaPredicted RBP16.36■□□□□ 0.21
ITGB4-207ENST00000580542 CREBRFQ8IUR6 639 aa16.36■□□□□ 0.21
ITGB4-207ENST00000580542 CYP2C19P33261 490 aa16.35■□□□□ 0.21
ITGB4-207ENST00000580542 ZNF397Q8NF99 534 aaPredicted RBP16.35■□□□□ 0.21
ITGB4-207ENST00000580542 PLEKHM2Q8IWE5 1019 aa16.35■□□□□ 0.21
ITGB4-207ENST00000580542 AXIN2Q9Y2T1 843 aa16.35■□□□□ 0.21
ITGB4-207ENST00000580542 CRB1P82279 1406 aa16.35■□□□□ 0.21
ITGB4-207ENST00000580542 KDM4AO75164 1064 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 AXDND1Q5T1B0 1012 aaPredicted RBP16.34■□□□□ 0.21
ITGB4-207ENST00000580542 NBPF6Q5VWK0 638 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 NBPF4Q96M43 638 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 KCNG1Q9UIX4 513 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 ADAMTS7Q9UKP4 1686 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 GOLGA6L6A8MZA4 724 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 HTATSF1O43719 755 aaKnown RBP16.34■□□□□ 0.21
ITGB4-207ENST00000580542 ST18O60284 1047 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 KMT5BQ4FZB7 885 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 ERBB3P21860 1342 aa16.34■□□□□ 0.21
ITGB4-207ENST00000580542 DCTN1Q14203 1278 aa16.33■□□□□ 0.21
ITGB4-207ENST00000580542 MTHFSDQ2M296 383 aaKnown RBP16.33■□□□□ 0.21
ITGB4-207ENST00000580542 FOXD4L6Q3SYB3 417 aaPredicted RBP16.33■□□□□ 0.2
ITGB4-207ENST00000580542 TPRNQ4KMQ1 711 aa16.33■□□□□ 0.2
ITGB4-207ENST00000580542 LMOD2Q6P5Q4 547 aa16.33■□□□□ 0.2
ITGB4-207ENST00000580542 FOXD4L3Q6VB84 417 aaPredicted RBP16.33■□□□□ 0.2
ITGB4-207ENST00000580542 DHX16O60231 1041 aaKnown RBP16.32■□□□□ 0.2
ITGB4-207ENST00000580542 CNPY4Q8N129 248 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 DCTPP1Q9H773 170 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 TNNT1P13805 278 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 NOP2P46087 812 aaKnown RBP16.32■□□□□ 0.2
ITGB4-207ENST00000580542 BCCIPQ9P287 314 aaKnown RBP eCLIP16.32■□□□□ 0.2
ITGB4-207ENST00000580542 ATP10DQ9P241 1426 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 TTC22Q5TAA0 569 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 ANKRD24Q8TF21 1146 aa16.32■□□□□ 0.2
ITGB4-207ENST00000580542 RGS12O14924 1447 aa16.31■□□□□ 0.2
ITGB4-207ENST00000580542 PRR29P0C7W0 189 aa16.31■□□□□ 0.2
ITGB4-207ENST00000580542 PAXBP1Q9Y5B6 917 aa16.31■□□□□ 0.2
ITGB4-207ENST00000580542 INTS3Q68E01 1043 aaKnown RBP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 C10orf67Q8IYJ2 551 aa16.3■□□□□ 0.2
ITGB4-207ENST00000580542 C16orf71Q8IYS4 520 aaPredicted RBP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 ZNF592Q92610 1267 aa16.3■□□□□ 0.2
ITGB4-207ENST00000580542 GDPD2Q9HCC8 539 aa16.3■□□□□ 0.2
ITGB4-207ENST00000580542 COL16A1Q07092 1604 aaPredicted RBP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
ITGB4-207ENST00000580542 ZNF622Q969S3 477 aaKnown RBP eCLIP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 MYCBPQ99417 103 aaPredicted RBP16.3■□□□□ 0.2
ITGB4-207ENST00000580542 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms