RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 KIAA1107Q9UPP5 1409 aa6.56□□□□□ -1.36
SPG11-211ENST00000558561 CAMSAP2Q08AD1 1489 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 CFAP65Q6ZU64 1925 aaKnown RBP6.55□□□□□ -1.36
SPG11-211ENST00000558561 FAM196BA6NMK8 535 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 SFI1A8K8P3 1242 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L15C9J2P7 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L10C9JJH3 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L13C9JLJ4 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L12C9JPN9 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L11C9JVI0 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L21D6R901 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L18D6R9N7 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L22D6RA61 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L17D6RBQ6 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L19D6RCP7 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L20D6RJB6 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 KIF3BO15066 747 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 PPP1R15AO75807 674 aaPredicted RBP6.55□□□□□ -1.36
SPG11-211ENST00000558561 ITGAEP38570 1179 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 CTSOP43234 321 aaPredicted RBP6.55□□□□□ -1.36
SPG11-211ENST00000558561 USP17L24Q0WX57 530 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 DPYDQ12882 1025 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 SCARF1Q14162 830 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 FAM50AQ14320 339 aaKnown RBP6.55□□□□□ -1.36
SPG11-211ENST00000558561 CNKSR1Q969H4 720 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 XAGE2Q96GT9 111 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 SERTAD1Q9UHV2 236 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 C9orf84Q5VXU9 1444 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 HECW2Q9P2P5 1572 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 MAP3K1Q13233 1512 aa6.55□□□□□ -1.36
SPG11-211ENST00000558561 ABCC5O15440 1437 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 PTPRKQ15262 1439 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 MYOM3Q5VTT5 1437 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 ATG7O95352 703 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 INHAP05111 366 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 TSPY4P0CV99 314 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 TSPY10P0CW01 314 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 CLN3Q13286 438 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 ANKMY2Q8IV38 441 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 ARXQ96QS3 562 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 ZNF358Q9NW07 568 aa6.54□□□□□ -1.36
SPG11-211ENST00000558561 ACIN1Q9UKV3 1341 aaKnown RBP6.53□□□□□ -1.36
SPG11-211ENST00000558561 FIGNL2A6NMB9 653 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 POTECB2RU33 542 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 LGR5O75473 907 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 CENPCQ03188 943 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 ESCO1Q5FWF5 840 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 SIX5Q8N196 739 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 NLRP3Q96P20 1036 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 ESYT1Q9BSJ8 1104 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 POLMQ9NP87 494 aaPredicted RBP6.53□□□□□ -1.36
SPG11-211ENST00000558561 GMPR2Q9P2T1 348 aaKnown RBP6.53□□□□□ -1.36
SPG11-211ENST00000558561 ZMIZ1Q9ULJ6 1067 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 NOVA2Q9UNW9 492 aaKnown RBP6.53□□□□□ -1.36
SPG11-211ENST00000558561 HRH3Q9Y5N1 445 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 ATP7AQ04656 1500 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 DHX29Q7Z478 1369 aaKnown RBP6.53□□□□□ -1.36
SPG11-211ENST00000558561 A2MP01023 1474 aa6.53□□□□□ -1.36
SPG11-211ENST00000558561 SEC13P55735 322 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 TNS4Q8IZW8 715 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 FAM200AQ8TCP9 573 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 STK32AQ8WU08 396 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 RBM19Q9Y4C8 960 aaKnown RBP6.52□□□□□ -1.37
SPG11-211ENST00000558561 ZMYM3Q14202 1370 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 INO80Q9ULG1 1556 aaPredicted RBP6.52□□□□□ -1.37
SPG11-211ENST00000558561 FER1L4A9Z1Z3 1794 aa6.52□□□□□ -1.37
SPG11-211ENST00000558561 SOS2Q07890 1332 aaPredicted RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 PTPN23Q9H3S7 1636 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 TTLL8A6PVC2 850 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 SOBPA7XYQ1 873 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 WASLO00401 505 aaPredicted RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 RNF144AP50876 292 aaPredicted RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 SMTNP53814 917 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 ELOAQ14241 798 aaKnown RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 FOXD4L5Q5VV16 416 aaPredicted RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 TSEN2Q8NCE0 465 aaKnown RBP6.51□□□□□ -1.37
SPG11-211ENST00000558561 SLC4A9Q96Q91 983 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 PLEKHH2Q8IVE3 1493 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 ADGBQ8N7X0 1667 aa6.51□□□□□ -1.37
SPG11-211ENST00000558561 FGD6Q6ZV73 1430 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 C3P01024 1663 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 CLTCQ00610 1675 aaKnown RBP6.5□□□□□ -1.37
SPG11-211ENST00000558561 CCDC141Q6ZP82 1450 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 CARNS1A5YM72 827 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 BACH1O14867 736 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 SNRPBP14678 240 aaKnown RBP6.5□□□□□ -1.37
SPG11-211ENST00000558561 TLR1Q15399 786 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 TMEM164Q5U3C3 297 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 HINFPQ9BQA5 517 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 FHDC1Q9C0D6 1143 aaPredicted RBP6.5□□□□□ -1.37
SPG11-211ENST00000558561 GRIP2Q9C0E4 1043 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 AGLP35573 1532 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 RTEL1-TNFRSF6BF6WH68 1400 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 MIA2Q96PC5 1412 aa6.5□□□□□ -1.37
SPG11-211ENST00000558561 LMTK3Q96Q04 1460 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 A6NJY4 79 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 SLC27A3Q5K4L6 730 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 TBCELQ5QJ74 424 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 PRICKLE2Q7Z3G6 844 aa6.49□□□□□ -1.37
SPG11-211ENST00000558561 GAS2L2Q8NHY3 880 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms