RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 POLA2Q14181 598 aa15.5■□□□□ 0.07
SHMT2-233ENST00000557529 GCKRQ14397 625 aa15.5■□□□□ 0.07
SHMT2-233ENST00000557529 GJD4Q96KN9 370 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-233ENST00000557529 TRPC5Q9UL62 973 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-233ENST00000557529 PNMA6EA0A0J9YXQ4 647 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 PPP1R42Q7Z4L9 355 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 ACSBG1Q96GR2 724 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 THSD7AQ9UPZ6 1657 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 ATRNO75882 1429 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 CYP19A1P11511 503 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-233ENST00000557529 TTLL7Q6ZT98 887 aa15.49■□□□□ 0.07
SHMT2-233ENST00000557529 ARFGEF2Q9Y6D5 1785 aa15.48■□□□□ 0.07
SHMT2-233ENST00000557529 SRGAP3O43295 1099 aa15.48■□□□□ 0.07
SHMT2-233ENST00000557529 RAB11FIP3O75154 756 aa15.48■□□□□ 0.07
SHMT2-233ENST00000557529 KIF6Q6ZMV9 814 aa15.48■□□□□ 0.07
SHMT2-233ENST00000557529 SLC4A9Q96Q91 983 aa15.48■□□□□ 0.07
SHMT2-233ENST00000557529 KAT6BQ8WYB5 2073 aa15.47■□□□□ 0.07
SHMT2-233ENST00000557529 COL15A1P39059 1388 aa15.47■□□□□ 0.07
SHMT2-233ENST00000557529 HSP90AB4PQ58FF6 505 aa15.47■□□□□ 0.07
SHMT2-233ENST00000557529 BMP2KLQ5H9B9 411 aa15.47■□□□□ 0.07
SHMT2-233ENST00000557529 LRRCC1Q9C099 1032 aa15.47■□□□□ 0.07
SHMT2-233ENST00000557529 PALLDQ8WX93 1383 aa15.46■□□□□ 0.07
SHMT2-233ENST00000557529 ONECUT3O60422 494 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-233ENST00000557529 SUCLG2Q96I99 432 aa15.46■□□□□ 0.07
SHMT2-233ENST00000557529 EXOC6BQ9Y2D4 811 aa15.46■□□□□ 0.07
SHMT2-233ENST00000557529 LOC102724428A0A0B4J2F2 783 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 APBB1O00213 710 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 SURF6O75683 361 aaKnown RBP15.45■□□□□ 0.06
SHMT2-233ENST00000557529 IL6STP40189 918 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-233ENST00000557529 SIK1P57059 783 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 TJP1Q07157 1748 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 NUP188Q5SRE5 1749 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 NPM2Q86SE8 214 aaKnown RBP15.45■□□□□ 0.06
SHMT2-233ENST00000557529 PLEKHM2Q8IWE5 1019 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 CCDC191Q8NCU4 936 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 ZBTB3Q9H5J0 574 aa15.45■□□□□ 0.06
SHMT2-233ENST00000557529 CWC25Q9NXE8 425 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-233ENST00000557529 CICQ96RK0 1608 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-233ENST00000557529 A0A087WZG4 1122 aa15.44■□□□□ 0.06
SHMT2-233ENST00000557529 ATP5J2-PTCD1G3V325 749 aa15.44■□□□□ 0.06
SHMT2-233ENST00000557529 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
SHMT2-233ENST00000557529 ANP32AP39687 249 aaKnown RBP15.44■□□□□ 0.06
SHMT2-233ENST00000557529 NOP58Q9Y2X3 529 aaKnown RBP15.44■□□□□ 0.06
SHMT2-233ENST00000557529 ZNF330Q9Y3S2 320 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-233ENST00000557529 MAP3K15Q6ZN16 1313 aa15.44■□□□□ 0.06
SHMT2-233ENST00000557529 TRIM28Q13263 835 aaKnown RBP15.43■□□□□ 0.06
SHMT2-233ENST00000557529 TCIRG1Q13488 830 aa15.43■□□□□ 0.06
SHMT2-233ENST00000557529 HSP90AB3PQ58FF7 597 aa15.43■□□□□ 0.06
SHMT2-233ENST00000557529 KAZALD1Q96I82 304 aa15.43■□□□□ 0.06
SHMT2-233ENST00000557529 BICC1Q9H694 974 aaKnown RBP15.43■□□□□ 0.06
SHMT2-233ENST00000557529 CCDC87Q9NVE4 849 aa15.43■□□□□ 0.06
SHMT2-233ENST00000557529 ZBTB1Q9Y2K1 713 aa15.43■□□□□ 0.06
SHMT2-233ENST00000557529 H7C1W4 665 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 KCNQ2O43526 872 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 SMARCA5O60264 1052 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-233ENST00000557529 UBE3BQ7Z3V4 1068 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 ERC1Q8IUD2 1116 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 KIF1BPQ96EK5 621 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 ISCA1Q9BUE6 129 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 QTRT2Q9H974 415 aaKnown RBP15.42■□□□□ 0.06
SHMT2-233ENST00000557529 AFDNP55196 1824 aaKnown RBP15.42■□□□□ 0.06
SHMT2-233ENST00000557529 ZNF831Q5JPB2 1677 aa15.42■□□□□ 0.06
SHMT2-233ENST00000557529 ERVV-1B6SEH8 477 aa15.41■□□□□ 0.06
SHMT2-233ENST00000557529 CASP7P55210 303 aa15.41■□□□□ 0.06
SHMT2-233ENST00000557529 GIGYF2Q6Y7W6 1299 aaKnown RBP15.41■□□□□ 0.06
SHMT2-233ENST00000557529 C16orf71Q8IYS4 520 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-233ENST00000557529 OSBPL3Q9H4L5 887 aa15.41■□□□□ 0.06
SHMT2-233ENST00000557529 CRKLP46109 303 aaKnown RBP15.4■□□□□ 0.06
SHMT2-233ENST00000557529 OS9Q13438 667 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-233ENST00000557529 RABL6Q3YEC7 729 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-233ENST00000557529 TTC22Q5TAA0 569 aa15.4■□□□□ 0.06
SHMT2-233ENST00000557529 INTS5Q6P9B9 1019 aaKnown RBP15.4■□□□□ 0.06
SHMT2-233ENST00000557529 SEPT12Q8IYM1 358 aa15.4■□□□□ 0.06
SHMT2-233ENST00000557529 RHPN1Q8TCX5 695 aa15.4■□□□□ 0.06
SHMT2-233ENST00000557529 UPF2Q9HAU5 1272 aaKnown RBP15.4■□□□□ 0.06
SHMT2-233ENST00000557529 EIF5BO60841 1220 aaKnown RBP15.39■□□□□ 0.05
SHMT2-233ENST00000557529 EIF5P55010 431 aaKnown RBP15.39■□□□□ 0.05
SHMT2-233ENST00000557529 ITPK1Q13572 414 aa15.39■□□□□ 0.05
SHMT2-233ENST00000557529 ARXQ96QS3 562 aa15.39■□□□□ 0.05
SHMT2-233ENST00000557529 NHSQ6T4R5 1651 aa15.39■□□□□ 0.05
SHMT2-233ENST00000557529 RREB1Q92766 1687 aa15.39■□□□□ 0.05
SHMT2-233ENST00000557529 DZIP3Q86Y13 1208 aaKnown RBP15.38■□□□□ 0.05
SHMT2-233ENST00000557529 OTUD7AQ8TE49 926 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-233ENST00000557529 AOX1Q06278 1338 aa15.38■□□□□ 0.05
SHMT2-233ENST00000557529 MX1P20591 662 aa15.37■□□□□ 0.05
SHMT2-233ENST00000557529 PDE1AP54750 535 aa15.37■□□□□ 0.05
SHMT2-233ENST00000557529 G3BP1Q13283 466 aaKnown RBP eCLIP15.37■□□□□ 0.055e-7■■■■□ 21.7
SHMT2-233ENST00000557529 EPHA10Q5JZY3 1008 aa15.37■□□□□ 0.05
SHMT2-233ENST00000557529 STAP2Q9UGK3 403 aa15.37■□□□□ 0.05
SHMT2-233ENST00000557529 SALL3Q9BXA9 1300 aa15.37■□□□□ 0.05
SHMT2-233ENST00000557529 CDC45O75419 566 aa15.36■□□□□ 0.05
SHMT2-233ENST00000557529 PCCAP05165 728 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-233ENST00000557529 GSPT1P15170 499 aaKnown RBP15.36■□□□□ 0.05
SHMT2-233ENST00000557529 BCL11AQ9H165 835 aa15.36■□□□□ 0.05
SHMT2-233ENST00000557529 COPRSQ9NQ92 184 aa15.36■□□□□ 0.05
SHMT2-233ENST00000557529 CNTNAP4Q9C0A0 1308 aa15.36■□□□□ 0.05
SHMT2-233ENST00000557529 ZNF772Q68DY9 489 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-233ENST00000557529 CLASRPQ8N2M8 674 aaKnown RBP15.36■□□□□ 0.05
SHMT2-233ENST00000557529 JARID2Q92833 1246 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-233ENST00000557529 IL1RAPL2Q9NP60 686 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms