RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 U2SURPO15042 1029 aaKnown RBP15.22■□□□□ 0.03
VPS33B-204ENST00000554660 A1BGP04217 495 aa15.22■□□□□ 0.03
VPS33B-204ENST00000554660 IL6STP40189 918 aaPredicted RBP15.22■□□□□ 0.03
VPS33B-204ENST00000554660 CNGB1Q14028 1251 aaPredicted RBP15.22■□□□□ 0.03
VPS33B-204ENST00000554660 CHADLQ6NUI6 762 aa15.22■□□□□ 0.03
VPS33B-204ENST00000554660 PRPF40BQ6NWY9 871 aaKnown RBP15.22■□□□□ 0.03
VPS33B-204ENST00000554660 CAMTA2O94983 1202 aa15.21■□□□□ 0.03
VPS33B-204ENST00000554660 PIP4K2AP48426 406 aaPredicted RBP15.21■□□□□ 0.03
VPS33B-204ENST00000554660 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
VPS33B-204ENST00000554660 PDZRN3Q9UPQ7 1066 aa15.21■□□□□ 0.03
VPS33B-204ENST00000554660 GNAT3A8MTJ3 354 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 SRGNP10124 158 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 ST5P78524 1137 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 GAS2L2Q8NHY3 880 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 FMNL2Q96PY5 1086 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 SETDB2Q96T68 719 aa15.2■□□□□ 0.02
VPS33B-204ENST00000554660 KCNQ3O43525 872 aa15.19■□□□□ 0.02
VPS33B-204ENST00000554660 STYK1Q6J9G0 422 aa15.19■□□□□ 0.02
VPS33B-204ENST00000554660 DZIP3Q86Y13 1208 aaKnown RBP15.19■□□□□ 0.02
VPS33B-204ENST00000554660 CNKSR1Q969H4 720 aa15.19■□□□□ 0.02
VPS33B-204ENST00000554660 TEX13AQ9BXU3 409 aaPredicted RBP15.19■□□□□ 0.02
VPS33B-204ENST00000554660 CEMIPQ8WUJ3 1361 aa15.19■□□□□ 0.02
VPS33B-204ENST00000554660 PER1O15534 1290 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-204ENST00000554660 NPM2Q86SE8 214 aaKnown RBP15.18■□□□□ 0.02
VPS33B-204ENST00000554660 CNTNAP1P78357 1384 aa15.18■□□□□ 0.02
VPS33B-204ENST00000554660 PRAMEF22A3QJZ6 481 aa15.17■□□□□ 0.02
VPS33B-204ENST00000554660 FOXN1O15353 648 aa15.17■□□□□ 0.02
VPS33B-204ENST00000554660 MASTLQ96GX5 879 aa15.17■□□□□ 0.02
VPS33B-204ENST00000554660 ZNF541Q9H0D2 1346 aa15.17■□□□□ 0.02
VPS33B-204ENST00000554660 BTBD11A6QL63 1104 aa15.16■□□□□ 0.02
VPS33B-204ENST00000554660 SOGA3Q5TF21 947 aa15.16■□□□□ 0.02
VPS33B-204ENST00000554660 OLFM4Q6UX06 510 aa15.16■□□□□ 0.02
VPS33B-204ENST00000554660 NBPF5PQ86XG9 351 aaPredicted RBP15.16■□□□□ 0.02
VPS33B-204ENST00000554660 TAF1DQ9H5J8 278 aaPredicted RBP15.16■□□□□ 0.02
VPS33B-204ENST00000554660 PASKQ96RG2 1323 aa15.16■□□□□ 0.02
VPS33B-204ENST00000554660 SCN4AP35499 1836 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 IQCA1LA6NCM1 817 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 CCDC93Q567U6 631 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 LDHDQ86WU2 507 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 L3MBTL3Q96JM7 780 aaPredicted RBP15.15■□□□□ 0.02
VPS33B-204ENST00000554660 PHACTR3Q96KR7 559 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 USP16Q9Y5T5 823 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 ADAMTSL1Q8N6G6 1762 aa15.15■□□□□ 0.02
VPS33B-204ENST00000554660 NEFLP07196 543 aa15.14■□□□□ 0.01
VPS33B-204ENST00000554660 PRKAR2BP31323 418 aa15.14■□□□□ 0.01
VPS33B-204ENST00000554660 EAPPQ56P03 285 aaPredicted RBP15.14■□□□□ 0.01
VPS33B-204ENST00000554660 C7orf43Q8WVR3 580 aa15.14■□□□□ 0.01
VPS33B-204ENST00000554660 ZNF277Q9NRM2 450 aaPredicted RBP15.14■□□□□ 0.01
VPS33B-204ENST00000554660 FAM177BA6PVY3 158 aa15.13■□□□□ 0.01
VPS33B-204ENST00000554660 FKBP4Q02790 459 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS33B-204ENST00000554660 ERICH6BQ5W0A0 696 aa15.13■□□□□ 0.01
VPS33B-204ENST00000554660 NPR1P16066 1061 aa15.12■□□□□ 0.01
VPS33B-204ENST00000554660 VEGFBP49765 207 aa15.12■□□□□ 0.01
VPS33B-204ENST00000554660 RSPH6AQ9H0K4 717 aa15.12■□□□□ 0.01
VPS33B-204ENST00000554660 ZNF652Q9Y2D9 606 aa15.12■□□□□ 0.01
VPS33B-204ENST00000554660 RNF123Q5XPI4 1314 aa15.12■□□□□ 0.01
VPS33B-204ENST00000554660 NPC1L1Q9UHC9 1359 aa15.11■□□□□ 0.01
VPS33B-204ENST00000554660 TMEM88BA6NKF7 163 aa15.11■□□□□ 0.01
VPS33B-204ENST00000554660 MCM10Q7L590 875 aa15.11■□□□□ 0.01
VPS33B-204ENST00000554660 NIP7Q9Y221 180 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS33B-204ENST00000554660 NBPF26B4DH59 902 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 ITGBL1O95965 494 aaPredicted RBP15.1■□□□□ 0.01
VPS33B-204ENST00000554660 EPHX2P34913 555 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 NBPF10Q6P3W6 841 aaKnown RBP15.1■□□□□ 0.01
VPS33B-204ENST00000554660 CLEC4GQ6UXB4 293 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 NBPF15Q8N660 670 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 AIDAQ96BJ3 306 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 HACL1Q9UJ83 578 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 LAMB4A4D0S4 1761 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 ABCC12Q96J65 1359 aa15.1■□□□□ 0.01
VPS33B-204ENST00000554660 COL4A5P29400 1685 aa15.09■□□□□ 0.01
VPS33B-204ENST00000554660 KLRG2A4D1S0 409 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-204ENST00000554660 SNRPA1P09661 255 aaKnown RBP15.09■□□□□ 0.01
VPS33B-204ENST00000554660 DCTN1Q14203 1278 aa15.09■□□□□ 0.01
VPS33B-204ENST00000554660 PRDM10Q9NQV6 1147 aa15.09■□□□□ 0.01
VPS33B-204ENST00000554660 CLEC11AQ9Y240 323 aa15.09■□□□□ 0.01
VPS33B-204ENST00000554660 SNED1Q8TER0 1413 aa15.09■□□□□ 0.01
VPS33B-204ENST00000554660 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
VPS33B-204ENST00000554660 CTCFP49711 727 aaPredicted RBP15.08■□□□□ 0
VPS33B-204ENST00000554660 HLFQ16534 295 aa15.08■□□□□ 0
VPS33B-204ENST00000554660 MAP1SQ66K74 1059 aaPredicted RBP15.08■□□□□ 0
VPS33B-204ENST00000554660 TPTE2Q6XPS3 522 aa15.08■□□□□ 0
VPS33B-204ENST00000554660 LTBP1Q14766 1721 aa15.07■□□□□ 0
VPS33B-204ENST00000554660 LBX1P52954 281 aa15.07■□□□□ 0
VPS33B-204ENST00000554660 SLC51AQ86UW1 340 aa15.07■□□□□ 0
VPS33B-204ENST00000554660 RTKN2Q8IZC4 609 aa15.07■□□□□ 0
VPS33B-204ENST00000554660 RTF1Q92541 710 aaKnown RBP15.07■□□□□ 0
VPS33B-204ENST00000554660 FZD9O00144 591 aa15.06■□□□□ 0
VPS33B-204ENST00000554660 CNTROBQ8N137 903 aa15.06■□□□□ 0
VPS33B-204ENST00000554660 SYNE4Q8N205 404 aa15.06■□□□□ 0
VPS33B-204ENST00000554660 CFAP53Q96M91 514 aa15.06■□□□□ 0
VPS33B-204ENST00000554660 WBP1LQ9NX94 342 aa15.06■□□□□ 0
VPS33B-204ENST00000554660 RASSF10A6NK89 507 aa15.05■□□□□ -0
VPS33B-204ENST00000554660 U2AF1L5P0DN76 240 aaPredicted RBP15.05■□□□□ -0
VPS33B-204ENST00000554660 GTF2E1P29083 439 aaPredicted RBP15.05■□□□□ -0
VPS33B-204ENST00000554660 U2AF1Q01081 240 aaKnown RBP eCLIP15.05■□□□□ -0
VPS33B-204ENST00000554660 PNMA8AQ86V59 439 aaPredicted RBP15.05■□□□□ -0
VPS33B-204ENST00000554660 NUTM1Q86Y26 1132 aa15.05■□□□□ -0
VPS33B-204ENST00000554660 ABT1Q9ULW3 272 aaKnown RBP15.05■□□□□ -0
VPS33B-204ENST00000554660 THSD7BQ9C0I4 1608 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms