RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 GNAT3A8MTJ3 354 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 A1BGP04217 495 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 VEGFBP49765 207 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 IL17REQ8NFR9 667 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 FMNL2Q96PY5 1086 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 CLEC11AQ9Y240 323 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 HEG1Q9ULI3 1381 aa15.85■□□□□ 0.13
SRP54-203ENST00000553544 COL3A1P02461 1466 aaPredicted RBP15.84■□□□□ 0.13
SRP54-203ENST00000553544 CAMTA2O94983 1202 aa15.84■□□□□ 0.13
SRP54-203ENST00000553544 ITGBL1O95965 494 aaPredicted RBP15.84■□□□□ 0.13
SRP54-203ENST00000553544 DLEC1Q9Y238 1755 aa15.83■□□□□ 0.12
SRP54-203ENST00000553544 EAPPQ56P03 285 aaPredicted RBP15.83■□□□□ 0.12
SRP54-203ENST00000553544 CLEC4GQ6UXB4 293 aa15.83■□□□□ 0.12
SRP54-203ENST00000553544 NBPF5PQ86XG9 351 aaPredicted RBP15.83■□□□□ 0.12
SRP54-203ENST00000553544 GAS2L2Q8NHY3 880 aa15.83■□□□□ 0.12
SRP54-203ENST00000553544 C7orf43Q8WVR3 580 aa15.83■□□□□ 0.12
SRP54-203ENST00000553544 CNGB1Q14028 1251 aaPredicted RBP15.82■□□□□ 0.12
SRP54-203ENST00000553544 DEFB115Q30KQ5 88 aa15.82■□□□□ 0.12
SRP54-203ENST00000553544 CCDC93Q567U6 631 aa15.82■□□□□ 0.12
SRP54-203ENST00000553544 PNMA8AQ86V59 439 aaPredicted RBP15.82■□□□□ 0.12
SRP54-203ENST00000553544 DZIP3Q86Y13 1208 aaKnown RBP15.82■□□□□ 0.12
SRP54-203ENST00000553544 RTKN2Q8IZC4 609 aa15.82■□□□□ 0.12
SRP54-203ENST00000553544 WBP1LQ9NX94 342 aa15.82■□□□□ 0.12
SRP54-203ENST00000553544 HACL1Q9UJ83 578 aa15.82■□□□□ 0.12
SRP54-203ENST00000553544 NPR1P16066 1061 aa15.81■□□□□ 0.12
SRP54-203ENST00000553544 TPTE2Q6XPS3 522 aa15.81■□□□□ 0.12
SRP54-203ENST00000553544 TIAM2Q8IVF5 1701 aa15.81■□□□□ 0.12
SRP54-203ENST00000553544 BTBD11A6QL63 1104 aa15.8■□□□□ 0.12
SRP54-203ENST00000553544 U2SURPO15042 1029 aaKnown RBP15.8■□□□□ 0.12
SRP54-203ENST00000553544 EPHX2P34913 555 aa15.8■□□□□ 0.12
SRP54-203ENST00000553544 LBX1P52954 281 aa15.8■□□□□ 0.12
SRP54-203ENST00000553544 FKBP4Q02790 459 aaKnown RBP eCLIP15.8■□□□□ 0.12
SRP54-203ENST00000553544 CNTROBQ8N137 903 aa15.8■□□□□ 0.12
SRP54-203ENST00000553544 ZNF652Q9Y2D9 606 aa15.8■□□□□ 0.12
SRP54-203ENST00000553544 ZNF277Q9NRM2 450 aaPredicted RBP15.79■□□□□ 0.12
SRP54-203ENST00000553544 FER1L6Q2WGJ9 1857 aa15.79■□□□□ 0.12
SRP54-203ENST00000553544 DICER1Q9UPY3 1922 aaKnown RBP15.78■□□□□ 0.12
SRP54-203ENST00000553544 KLRG2A4D1S0 409 aaPredicted RBP15.78■□□□□ 0.12
SRP54-203ENST00000553544 PPP2R1AP30153 589 aa15.78■□□□□ 0.12
SRP54-203ENST00000553544 ALDH1B1P30837 517 aa15.78■□□□□ 0.12
SRP54-203ENST00000553544 MAP2K1Q02750 393 aaPredicted RBP15.78■□□□□ 0.12
SRP54-203ENST00000553544 USP16Q9Y5T5 823 aa15.78■□□□□ 0.12
SRP54-203ENST00000553544 RASSF10A6NK89 507 aa15.77■□□□□ 0.12
SRP54-203ENST00000553544 KCNQ3O43525 872 aa15.77■□□□□ 0.12
SRP54-203ENST00000553544 SYNE4Q8N205 404 aa15.77■□□□□ 0.12
SRP54-203ENST00000553544 ANKRD31Q8N7Z5 1873 aa15.77■□□□□ 0.11
SRP54-203ENST00000553544 SLX4Q8IY92 1834 aa15.77■□□□□ 0.11
SRP54-203ENST00000553544 WDR33Q9C0J8 1336 aaKnown RBP15.76■□□□□ 0.11
SRP54-203ENST00000553544 ZNF541Q9H0D2 1346 aa15.76■□□□□ 0.11
SRP54-203ENST00000553544 FZD9O00144 591 aa15.76■□□□□ 0.11
SRP54-203ENST00000553544 SNRPA1P09661 255 aaKnown RBP15.76■□□□□ 0.11
SRP54-203ENST00000553544 GTF2E1P29083 439 aaPredicted RBP15.76■□□□□ 0.11
SRP54-203ENST00000553544 MAP1SQ66K74 1059 aaPredicted RBP15.76■□□□□ 0.11
SRP54-203ENST00000553544 GPC2Q8N158 579 aa15.76■□□□□ 0.11
SRP54-203ENST00000553544 NIP7Q9Y221 180 aaKnown RBP eCLIP15.76■□□□□ 0.11
SRP54-203ENST00000553544 IARSP41252 1262 aaKnown RBP15.75■□□□□ 0.11
SRP54-203ENST00000553544 PIP4K2AP48426 406 aaPredicted RBP15.75■□□□□ 0.11
SRP54-203ENST00000553544 JDP2Q8WYK2 163 aa15.75■□□□□ 0.11
SRP54-203ENST00000553544 ABHD8Q96I13 439 aa15.75■□□□□ 0.11
SRP54-203ENST00000553544 ABT1Q9ULW3 272 aaKnown RBP15.75■□□□□ 0.11
SRP54-203ENST00000553544 RGL2O15211 777 aa15.74■□□□□ 0.11
SRP54-203ENST00000553544 HSPA8P11142 646 aaKnown RBP15.74■□□□□ 0.11
SRP54-203ENST00000553544 OLFM4Q6UX06 510 aa15.74■□□□□ 0.11
SRP54-203ENST00000553544 CFAP53Q96M91 514 aa15.74■□□□□ 0.11
SRP54-203ENST00000553544 SIPA1L3O60292 1781 aaPredicted RBP15.74■□□□□ 0.11
SRP54-203ENST00000553544 UBR2Q8IWV8 1755 aa15.74■□□□□ 0.11
SRP54-203ENST00000553544 SCN4AP35499 1836 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 RNF123Q5XPI4 1314 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 FAM177BA6PVY3 158 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 PHACTR3Q96KR7 559 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 BEGAINQ9BUH8 593 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 CEMIPQ8WUJ3 1361 aa15.73■□□□□ 0.11
SRP54-203ENST00000553544 EIF6P56537 245 aaKnown RBP15.72■□□□□ 0.11
SRP54-203ENST00000553544 CC2D2BQ6DHV5 1058 aa15.72■□□□□ 0.11
SRP54-203ENST00000553544 RTF1Q92541 710 aaKnown RBP15.72■□□□□ 0.11
SRP54-203ENST00000553544 PSMD1Q99460 953 aa15.72■□□□□ 0.11
SRP54-203ENST00000553544 RSPH6AQ9H0K4 717 aa15.72■□□□□ 0.11
SRP54-203ENST00000553544 DDX21Q9NR30 783 aaKnown RBP eCLIP15.72■□□□□ 0.11
SRP54-203ENST00000553544 PRAMEF22A3QJZ6 481 aa15.71■□□□□ 0.11
SRP54-203ENST00000553544 LMOD1P29536 600 aaPredicted RBP15.71■□□□□ 0.11
SRP54-203ENST00000553544 ECE1P42892 770 aa15.71■□□□□ 0.11
SRP54-203ENST00000553544 GJA3Q9Y6H8 435 aa15.71■□□□□ 0.11
SRP54-203ENST00000553544 COL11A2P13942 1736 aaPredicted RBP15.71■□□□□ 0.1
SRP54-203ENST00000553544 NBPF26B4DH59 902 aa15.7■□□□□ 0.1
SRP54-203ENST00000553544 SLC34A2O95436 690 aa15.7■□□□□ 0.1
SRP54-203ENST00000553544 GRIPAP1Q4V328 841 aa15.7■□□□□ 0.1
SRP54-203ENST00000553544 NBPF10Q6P3W6 841 aaKnown RBP15.7■□□□□ 0.1
SRP54-203ENST00000553544 NBPF15Q8N660 670 aa15.7■□□□□ 0.1
SRP54-203ENST00000553544 NUDCQ9Y266 331 aa15.7■□□□□ 0.1
SRP54-203ENST00000553544 PRKAR2BP31323 418 aa15.69■□□□□ 0.1
SRP54-203ENST00000553544 FAM161AQ3B820 660 aa15.69■□□□□ 0.1
SRP54-203ENST00000553544 PAXIP1Q6ZW49 1069 aaPredicted RBP15.69■□□□□ 0.1
SRP54-203ENST00000553544 CAPNS2Q96L46 248 aa15.69■□□□□ 0.1
SRP54-203ENST00000553544 GPR101Q96P66 508 aaPredicted RBP15.69■□□□□ 0.1
SRP54-203ENST00000553544 NYXQ9GZU5 481 aa15.69■□□□□ 0.1
SRP54-203ENST00000553544 SCN7AQ01118 1682 aa15.69■□□□□ 0.1
SRP54-203ENST00000553544 DLG5Q8TDM6 1919 aa15.68■□□□□ 0.1
SRP54-203ENST00000553544 CCDC85CA6NKD9 419 aa15.68■□□□□ 0.1
SRP54-203ENST00000553544 HLFQ16534 295 aa15.68■□□□□ 0.1
SRP54-203ENST00000553544 U2AF1L5P0DN76 240 aaPredicted RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms