RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SLKQ9H2G2 1235 aaPredicted RBP17.74■□□□□ 0.43
VPS33A-209ENST00000544349 IBTKQ9P2D0 1353 aaPredicted RBP17.74■□□□□ 0.43
VPS33A-209ENST00000544349 IGKV5-2P06315 115 aa17.74■□□□□ 0.43
VPS33A-209ENST00000544349 PRIM1P49642 420 aaKnown RBP17.74■□□□□ 0.43
VPS33A-209ENST00000544349 NEXNQ0ZGT2 675 aa17.74■□□□□ 0.43
VPS33A-209ENST00000544349 SYTL4Q96C24 671 aaPredicted RBP17.74■□□□□ 0.43
VPS33A-209ENST00000544349 TBC1D2Q9BYX2 928 aa17.74■□□□□ 0.43
VPS33A-209ENST00000544349 BECN1Q14457 450 aa17.73■□□□□ 0.43
VPS33A-209ENST00000544349 SSH3Q8TE77 659 aa17.73■□□□□ 0.43
VPS33A-209ENST00000544349 ARFGEF2Q9Y6D5 1785 aa17.73■□□□□ 0.43
VPS33A-209ENST00000544349 UTYO14607 1347 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 HSPA1LP34931 641 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 PLBD2Q8NHP8 589 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 MYD88Q99836 296 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 RBM42Q9BTD8 480 aaKnown RBP17.72■□□□□ 0.43
VPS33A-209ENST00000544349 NEURL1BA8MQ27 555 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 GRM8O00222 908 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 PPP1R42Q7Z4L9 355 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 DNAJC10Q8IXB1 793 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 HDAC5Q9UQL6 1122 aa17.72■□□□□ 0.43
VPS33A-209ENST00000544349 POLA2Q14181 598 aa17.71■□□□□ 0.43
VPS33A-209ENST00000544349 FAM98CQ17RN3 349 aaKnown RBP17.71■□□□□ 0.43
VPS33A-209ENST00000544349 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.71■□□□□ 0.43
VPS33A-209ENST00000544349 USP21Q9UK80 565 aa17.71■□□□□ 0.42
VPS33A-209ENST00000544349 EXOC6BQ9Y2D4 811 aa17.71■□□□□ 0.42
VPS33A-209ENST00000544349 APBB1O00213 710 aa17.7■□□□□ 0.42
VPS33A-209ENST00000544349 C22orf23Q9BZE7 217 aa17.7■□□□□ 0.42
VPS33A-209ENST00000544349 ANTXR1Q9H6X2 564 aa17.7■□□□□ 0.42
VPS33A-209ENST00000544349 SMARCA5O60264 1052 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-209ENST00000544349 GCKRQ14397 625 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 TTLL7Q6ZT98 887 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 PLEKHM2Q8IWE5 1019 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 C16orf71Q8IYS4 520 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-209ENST00000544349 SLC4A9Q96Q91 983 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 SRGAP3O43295 1099 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 STARD3NLO95772 234 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 MTX1Q13505 466 aa17.69■□□□□ 0.42
VPS33A-209ENST00000544349 BMP2KLQ5H9B9 411 aa17.68■□□□□ 0.42
VPS33A-209ENST00000544349 ACSBG1Q96GR2 724 aa17.68■□□□□ 0.42
VPS33A-209ENST00000544349 AFDNP55196 1824 aaKnown RBP17.68■□□□□ 0.42
VPS33A-209ENST00000544349 NUP188Q5SRE5 1749 aa17.68■□□□□ 0.42
VPS33A-209ENST00000544349 SOCS7O14512 581 aa17.68■□□□□ 0.42
VPS33A-209ENST00000544349 ILDR2Q71H61 639 aa17.67■□□□□ 0.42
VPS33A-209ENST00000544349 SUCLG2Q96I99 432 aa17.67■□□□□ 0.42
VPS33A-209ENST00000544349 GSE1Q14687 1217 aa17.66■□□□□ 0.42
VPS33A-209ENST00000544349 MEX3CQ5U5Q3 659 aaKnown RBP17.66■□□□□ 0.42
VPS33A-209ENST00000544349 KAZALD1Q96I82 304 aa17.66■□□□□ 0.42
VPS33A-209ENST00000544349 LRRCC1Q9C099 1032 aa17.66■□□□□ 0.42
VPS33A-209ENST00000544349 OTUD7AQ8TE49 926 aaPredicted RBP17.66■□□□□ 0.42
VPS33A-209ENST00000544349 ATP5J2-PTCD1G3V325 749 aa17.65■□□□□ 0.42
VPS33A-209ENST00000544349 CYP19A1P11511 503 aaPredicted RBP17.65■□□□□ 0.42
VPS33A-209ENST00000544349 TJP1Q07157 1748 aa17.65■□□□□ 0.42
VPS33A-209ENST00000544349 A0A0G2JS52 829 aa17.65■□□□□ 0.42
VPS33A-209ENST00000544349 RAB11FIP3O75154 756 aa17.65■□□□□ 0.42
VPS33A-209ENST00000544349 SURF6O75683 361 aaKnown RBP17.65■□□□□ 0.42
VPS33A-209ENST00000544349 SPRYD3Q8NCJ5 442 aa17.65■□□□□ 0.42
VPS33A-209ENST00000544349 ZBTB3Q9H5J0 574 aa17.64■□□□□ 0.41
VPS33A-209ENST00000544349 BICC1Q9H694 974 aaKnown RBP17.64■□□□□ 0.41
VPS33A-209ENST00000544349 THSD7AQ9UPZ6 1657 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 A0A087WZG4 1122 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 GSPT1P15170 499 aaKnown RBP17.62■□□□□ 0.41
VPS33A-209ENST00000544349 TTC22Q5TAA0 569 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 ZNF330Q9Y3S2 320 aaPredicted RBP17.62■□□□□ 0.41
VPS33A-209ENST00000544349 HSP90AB4PQ58FF6 505 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 OSBPL3Q9H4L5 887 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 AFF2P51816 1311 aa17.62■□□□□ 0.41
VPS33A-209ENST00000544349 COL15A1P39059 1388 aa17.61■□□□□ 0.41
VPS33A-209ENST00000544349 KCNQ2O43526 872 aa17.61■□□□□ 0.41
VPS33A-209ENST00000544349 GJD4Q96KN9 370 aaPredicted RBP17.61■□□□□ 0.41
VPS33A-209ENST00000544349 SALL3Q9BXA9 1300 aa17.61■□□□□ 0.41
VPS33A-209ENST00000544349 CASP7P55210 303 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 EPHA10Q5JZY3 1008 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 KIF6Q6ZMV9 814 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 UBE3BQ7Z3V4 1068 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 CCDC191Q8NCU4 936 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 RHPN1Q8TCX5 695 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 JARID2Q92833 1246 aaPredicted RBP17.6■□□□□ 0.41
VPS33A-209ENST00000544349 KIF1BPQ96EK5 621 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 CWC25Q9NXE8 425 aaPredicted RBP17.6■□□□□ 0.41
VPS33A-209ENST00000544349 ZBTB1Q9Y2K1 713 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 H7C1W4 665 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 PDE1AP54750 535 aa17.6■□□□□ 0.41
VPS33A-209ENST00000544349 LOC102724428A0A0B4J2F2 783 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 ATP6V1AP38606 617 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 RBM25P49756 843 aaKnown RBP17.59■□□□□ 0.41
VPS33A-209ENST00000544349 SIK1P57059 783 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 TCIRG1Q13488 830 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 SMARCC1Q92922 1105 aaPredicted RBP17.59■□□□□ 0.41
VPS33A-209ENST00000544349 ISCA1Q9BUE6 129 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 PALLDQ8WX93 1383 aa17.59■□□□□ 0.41
VPS33A-209ENST00000544349 CICQ96RK0 1608 aaPredicted RBP17.58■□□□□ 0.41
VPS33A-209ENST00000544349 MAP3K15Q6ZN16 1313 aa17.58■□□□□ 0.4
VPS33A-209ENST00000544349 IL6STP40189 918 aaPredicted RBP17.58■□□□□ 0.4
VPS33A-209ENST00000544349 TBC1D9Q6ZT07 1266 aa17.58■□□□□ 0.4
VPS33A-209ENST00000544349 IL1RAPL2Q9NP60 686 aa17.58■□□□□ 0.4
VPS33A-209ENST00000544349 PA2G4Q9UQ80 394 aaKnown RBP17.58■□□□□ 0.4
VPS33A-209ENST00000544349 ATRNO75882 1429 aa17.58■□□□□ 0.4
VPS33A-209ENST00000544349 RABL6Q3YEC7 729 aaPredicted RBP17.57■□□□□ 0.4
VPS33A-209ENST00000544349 IL27Q8NEV9 243 aa17.57■□□□□ 0.4
VPS33A-209ENST00000544349 MX1P20591 662 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms