RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 RABEP1Q15276 862 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 KSR2Q6VAB6 950 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 PPP1R42Q7Z4L9 355 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 RUFY2Q8WXA3 655 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 FIBPO43427 364 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 SNRPA1P09661 255 aaKnown RBP12□□□□□ -0.49
TRAF1-202ENST00000540010 TTC22Q5TAA0 569 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 CCAR2Q8N163 923 aaKnown RBP12□□□□□ -0.49
TRAF1-202ENST00000540010 ZNF496Q96IT1 587 aaPredicted RBP12□□□□□ -0.49
TRAF1-202ENST00000540010 IL1RAPL2Q9NP60 686 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 WDR17Q8IZU2 1322 aa11.99□□□□□ -0.49
TRAF1-202ENST00000540010 CYP27B1O15528 508 aa11.99□□□□□ -0.49
TRAF1-202ENST00000540010 PIP4K2AP48426 406 aaPredicted RBP11.99□□□□□ -0.49
TRAF1-202ENST00000540010 DDX21Q9NR30 783 aaKnown RBP eCLIP11.99□□□□□ -0.49
TRAF1-202ENST00000540010 PTCD1O75127 700 aaKnown RBP11.99□□□□□ -0.49
TRAF1-202ENST00000540010 MED1Q15648 1581 aaPredicted RBP11.99□□□□□ -0.49
TRAF1-202ENST00000540010 SOS2Q07890 1332 aaPredicted RBP11.99□□□□□ -0.49
TRAF1-202ENST00000540010 NBPF7P0C2Y1 421 aaPredicted RBP11.98□□□□□ -0.49
TRAF1-202ENST00000540010 CWF19L2Q2TBE0 894 aaKnown RBP11.98□□□□□ -0.49
TRAF1-202ENST00000540010 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 PCDH11XQ9BZA7 1347 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 PCDH11YQ9BZA8 1340 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 LARP1Q6PKG0 1096 aaKnown RBP11.98□□□□□ -0.49
TRAF1-202ENST00000540010 XAGE3Q8WTP9 111 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 TSHZ3Q63HK5 1081 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 KIF3AQ9Y496 699 aa11.98□□□□□ -0.49
TRAF1-202ENST00000540010 RGPD2P0DJD1 1756 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 BEND3Q5T5X7 828 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 COPS6Q7L5N1 327 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 ISY1Q9ULR0 285 aaKnown RBP11.97□□□□□ -0.49
TRAF1-202ENST00000540010 TRPM3Q9HCF6 1732 aaPredicted RBP11.97□□□□□ -0.49
TRAF1-202ENST00000540010 TNNT3P45378 269 aaPredicted RBP11.97□□□□□ -0.49
TRAF1-202ENST00000540010 CCDC173Q0VFZ6 552 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 HSP90AB4PQ58FF6 505 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 BTG4Q9NY30 223 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 MEGF6O75095 1541 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 CPDO75976 1380 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 ZNF771Q7L3S4 317 aaPredicted RBP11.97□□□□□ -0.49
TRAF1-202ENST00000540010 MYD88Q99836 296 aa11.97□□□□□ -0.49
TRAF1-202ENST00000540010 ALDH1L1O75891 902 aa11.96□□□□□ -0.49
TRAF1-202ENST00000540010 MX1P20591 662 aa11.96□□□□□ -0.49
TRAF1-202ENST00000540010 SYTL4Q96C24 671 aaPredicted RBP11.96□□□□□ -0.49
TRAF1-202ENST00000540010 STRCP1A6NGW2 1772 aa11.96□□□□□ -0.49
TRAF1-202ENST00000540010 GSPT1P15170 499 aaKnown RBP11.96□□□□□ -0.49
TRAF1-202ENST00000540010 SDSP20132 328 aa11.96□□□□□ -0.49
TRAF1-202ENST00000540010 PDE1AP54750 535 aa11.96□□□□□ -0.5
TRAF1-202ENST00000540010 USP16Q9Y5T5 823 aa11.96□□□□□ -0.5
TRAF1-202ENST00000540010 MAP4K4O95819 1239 aaPredicted RBP11.95□□□□□ -0.5
TRAF1-202ENST00000540010 MBD3O95983 291 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 G3BP1Q13283 466 aaKnown RBP eCLIP11.95□□□□□ -0.5
TRAF1-202ENST00000540010 NUTM1Q86Y26 1132 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 LINS1Q8NG48 757 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 CCDC39Q9UFE4 941 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 SPC24Q8NBT2 197 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 CARD10Q9BWT7 1032 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 RAB11FIP3O75154 756 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 ADAMTS2O95450 1211 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 PIP4K2BP78356 416 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 ANKRD13DQ6ZTN6 518 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 TMOD3Q9NYL9 352 aa11.95□□□□□ -0.5
TRAF1-202ENST00000540010 OVOS2A0A0G2JMS6 1433 aa11.94□□□□□ -0.5
TRAF1-202ENST00000540010 NUTM2BA6NNL0 878 aaPredicted RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 NUTM2EB1AL46 878 aaPredicted RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 SASS6Q6UVJ0 657 aa11.94□□□□□ -0.5
TRAF1-202ENST00000540010 NUTM2AQ8IVF1 878 aaPredicted RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 KIF1BPQ96EK5 621 aa11.94□□□□□ -0.5
TRAF1-202ENST00000540010 GRM8O00222 908 aa11.94□□□□□ -0.5
TRAF1-202ENST00000540010 CLASRPQ8N2M8 674 aaKnown RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 RBM42Q9BTD8 480 aaKnown RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 UPF3BQ9BZI7 483 aaKnown RBP11.94□□□□□ -0.5
TRAF1-202ENST00000540010 LRRC37A3O60309 1634 aa11.94□□□□□ -0.5
TRAF1-202ENST00000540010 ALS2Q96Q42 1657 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 ERC2O15083 957 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 HOMER1Q86YM7 354 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 PES1O00541 588 aaKnown RBP11.93□□□□□ -0.5
TRAF1-202ENST00000540010 RNF20Q5VTR2 975 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 RHPN1Q8TCX5 695 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 SSH3Q8TE77 659 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 TNPO1Q92973 898 aaKnown RBP11.93□□□□□ -0.5
TRAF1-202ENST00000540010 TSPY26PQ9H489 355 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 KDM6AO15550 1401 aaPredicted RBP11.93□□□□□ -0.5
TRAF1-202ENST00000540010 ADCY9O60503 1353 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 SSFA2P28290 1259 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 RASSF8Q8NHQ8 419 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 PANK2Q9BZ23 570 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 SIL1Q9H173 461 aa11.93□□□□□ -0.5
TRAF1-202ENST00000540010 SYCE3A1L190 88 aa11.92□□□□□ -0.5
TRAF1-202ENST00000540010 ATP5J2-PTCD1G3V325 749 aa11.92□□□□□ -0.5
TRAF1-202ENST00000540010 JARID2Q92833 1246 aaPredicted RBP11.92□□□□□ -0.5
TRAF1-202ENST00000540010 TRIM5Q9C035 493 aa11.92□□□□□ -0.5
TRAF1-202ENST00000540010 PHRF1Q9P1Y6 1649 aaKnown RBP11.92□□□□□ -0.5
TRAF1-202ENST00000540010 CEBPZQ03701 1054 aaKnown RBP11.92□□□□□ -0.5
TRAF1-202ENST00000540010 CIZ1Q9ULV3 898 aaPredicted RBP11.92□□□□□ -0.5
TRAF1-202ENST00000540010 RGPD5Q99666 1765 aa11.92□□□□□ -0.5
TRAF1-202ENST00000540010 TPM2P07951 284 aa11.92□□□□□ -0.5
TRAF1-202ENST00000540010 PXDNLA1KZ92 1463 aa11.91□□□□□ -0.5
TRAF1-202ENST00000540010 IBTKQ9P2D0 1353 aaPredicted RBP11.91□□□□□ -0.5
TRAF1-202ENST00000540010 ERVV-2B6SEH9 535 aa11.91□□□□□ -0.5
TRAF1-202ENST00000540010 CPLX1O14810 134 aa11.91□□□□□ -0.5
TRAF1-202ENST00000540010 ERC1Q8IUD2 1116 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms