RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	ACSBG1	Q96GR2	724 aa		11.79	□□□□□ -0.52
TPM3-222	ENST00000515609	CCDC87	Q9NVE4	849 aa		11.79	□□□□□ -0.52
TPM3-222	ENST00000515609	UTY	O14607	1347 aa		11.79	□□□□□ -0.52
TPM3-222	ENST00000515609	GLI3	P10071	1580 aa		11.79	□□□□□ -0.52
TPM3-222	ENST00000515609	NEURL1B	A8MQ27	555 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	NBPF26	B4DH59	902 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	RAB11FIP3	O75154	756 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	TRIM28	Q13263	835 aa	Known RBP	11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	GCKR	Q14397	625 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	NBPF14	Q5TI25	921 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	NBPF10	Q6P3W6	841 aa	Known RBP	11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	CHD1L	Q86WJ1	897 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	NBPF15	Q8N660	670 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	MYD88	Q99836	296 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	CWC25	Q9NXE8	425 aa	Predicted RBP	11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	KAT6B	Q8WYB5	2073 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	CIC	Q96RK0	1608 aa	Predicted RBP	11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	COL15A1	P39059	1388 aa		11.78	□□□□□ -0.52
TPM3-222	ENST00000515609	MTX1	Q13505	466 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	RC3H1	Q5TC82	1133 aa	Known RBP	11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	ANKRD45	Q5TZF3	282 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	KRT27	Q7Z3Y8	459 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	ERC1	Q8IUD2	1116 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	C1orf115	Q9H7X2	142 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	PDZRN3	Q9UPQ7	1066 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	ZNF652	Q9Y2D9	606 aa		11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	LRRFIP2	Q9Y608	721 aa	Known RBP	11.77	□□□□□ -0.53
TPM3-222	ENST00000515609	RGS3	P49796	1198 aa		11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	TCIRG1	Q13488	830 aa		11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	SSH3	Q8TE77	659 aa		11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	ARX	Q96QS3	562 aa		11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	MAP3K15	Q6ZN16	1313 aa		11.76	□□□□□ -0.53
TPM3-222	ENST00000515609	NHS	Q6T4R5	1651 aa		11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	SRGAP3	O43295	1099 aa		11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	RXRB	P28702	533 aa		11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	CRKL	P46109	303 aa	Known RBP	11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	CNTNAP4	Q9C0A0	1308 aa		11.75	□□□□□ -0.53
TPM3-222	ENST00000515609	IGKV5-2	P06315	115 aa		11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	CWF19L2	Q2TBE0	894 aa	Known RBP	11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	SLC27A3	Q5K4L6	730 aa		11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	DZIP3	Q86Y13	1208 aa	Known RBP	11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	SIRT2	Q8IXJ6	389 aa		11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	LRRCC1	Q9C099	1032 aa		11.74	□□□□□ -0.53
TPM3-222	ENST00000515609	KCNQ2	O43526	872 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	EIF5	P55010	431 aa	Known RBP	11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	FAM161A	Q3B820	660 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	PARP10	Q53GL7	1025 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	CLEC4G	Q6UXB4	293 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	TTLL7	Q6ZT98	887 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	PPP1R42	Q7Z4L9	355 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	AK7	Q96M32	723 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	ZBTB3	Q9H5J0	574 aa		11.73	□□□□□ -0.53
TPM3-222	ENST00000515609	ARFGEF2	Q9Y6D5	1785 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609		H7C1W4	665 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	OS9	Q13438	667 aa	Predicted RBP	11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	POLA2	Q14181	598 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	KIF1BP	Q96EK5	621 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	SLC4A9	Q96Q91	983 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	ISCA1	Q9BUE6	129 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	UPF2	Q9HAU5	1272 aa	Known RBP	11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	CCNL1	Q9UK58	526 aa	Predicted RBP	11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	ZBTB1	Q9Y2K1	713 aa		11.72	□□□□□ -0.53
TPM3-222	ENST00000515609	SURF6	O75683	361 aa	Known RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	PCCA	P05165	728 aa	Predicted RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	ADRA2B	P18089	450 aa		11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	PIP4K2A	P48426	406 aa	Predicted RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	INTS5	Q6P9B9	1019 aa	Known RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	UBE3B	Q7Z3V4	1068 aa		11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	GPATCH3	Q96I76	525 aa		11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	LNPK	Q9C0E8	428 aa		11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	NOP58	Q9Y2X3	529 aa	Known RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	RTCB	Q9Y3I0	505 aa	Known RBP	11.71	□□□□□ -0.53
TPM3-222	ENST00000515609	TJP1	Q07157	1748 aa		11.71	□□□□□ -0.54
TPM3-222	ENST00000515609	ATP5J2-PTCD1	G3V325	749 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	RPS6KA4	O75676	772 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	PDE4A	P27815	886 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	BMP2KL	Q5H9B9	411 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	CASC1	Q6TDU7	716 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	FBXO3	Q9UK99	471 aa		11.7	□□□□□ -0.54
TPM3-222	ENST00000515609	CDHR2	Q9BYE9	1310 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	PNMA6E	A0A0J9YXQ4	647 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	ZPR1	O75312	459 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	ITPK1	Q13572	414 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	RABL6	Q3YEC7	729 aa	Predicted RBP	11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	CLASRP	Q8N2M8	674 aa	Known RBP	11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	PLA2G12B	Q9BX93	195 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	BICC1	Q9H694	974 aa	Known RBP	11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	BTAF1	O14981	1849 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	NUP188	Q5SRE5	1749 aa		11.69	□□□□□ -0.54
TPM3-222	ENST00000515609	RREB1	Q92766	1687 aa		11.68	□□□□□ -0.54
TPM3-222	ENST00000515609	AOX1	Q06278	1338 aa		11.68	□□□□□ -0.54
TPM3-222	ENST00000515609	AFDN	P55196	1824 aa	Known RBP	11.68	□□□□□ -0.54
TPM3-222	ENST00000515609	SUCLG2	Q96I99	432 aa		11.68	□□□□□ -0.54
TPM3-222	ENST00000515609	BACH2	Q9BYV9	841 aa		11.68	□□□□□ -0.54

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