RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 ATP8B2P98198 1209 aa11.44□□□□□ -0.58
CPNE4-213ENST00000515418 CHD1LQ86WJ1 897 aa11.44□□□□□ -0.58
CPNE4-213ENST00000515418 TEX13AQ9BXU3 409 aaPredicted RBP11.44□□□□□ -0.58
CPNE4-213ENST00000515418 N4BP2Q86UW6 1770 aaPredicted RBP11.44□□□□□ -0.58
CPNE4-213ENST00000515418 NEURL1BA8MQ27 555 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 ALDH1L1O75891 902 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 KCNQ4P56696 695 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 NEXNQ0ZGT2 675 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 SEPT12Q8IYM1 358 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 PLBD2Q8NHP8 589 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.43□□□□□ -0.58
CPNE4-213ENST00000515418 ERBB4Q15303 1308 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 SMARCA5O60264 1052 aaPredicted RBP11.43□□□□□ -0.58
CPNE4-213ENST00000515418 ATP6V1AP38606 617 aa11.43□□□□□ -0.58
CPNE4-213ENST00000515418 LOC102724428A0A0B4J2F2 783 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 ONECUT3O60422 494 aaPredicted RBP11.42□□□□□ -0.58
CPNE4-213ENST00000515418 SIK1P57059 783 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 GCKRQ14397 625 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 PPP1R42Q7Z4L9 355 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 C16orf71Q8IYS4 520 aaPredicted RBP11.42□□□□□ -0.58
CPNE4-213ENST00000515418 EXOC6BQ9Y2D4 811 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 ATRNO75882 1429 aa11.42□□□□□ -0.58
CPNE4-213ENST00000515418 GRM8O00222 908 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 HMMRO75330 724 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 ITPK1Q13572 414 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 KAZALD1Q96I82 304 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 BACH2Q9BYV9 841 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 ZBTB1Q9Y2K1 713 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 RTL5Q5HYW3 569 aaPredicted RBP11.41□□□□□ -0.58
CPNE4-213ENST00000515418 SUCLG2Q96I99 432 aa11.41□□□□□ -0.58
CPNE4-213ENST00000515418 PALLDQ8WX93 1383 aa11.4□□□□□ -0.58
CPNE4-213ENST00000515418 SRGAP3O43295 1099 aa11.4□□□□□ -0.58
CPNE4-213ENST00000515418 INTS5Q6P9B9 1019 aaKnown RBP11.4□□□□□ -0.58
CPNE4-213ENST00000515418 ARFGEF2Q9Y6D5 1785 aa11.4□□□□□ -0.58
CPNE4-213ENST00000515418 THSD7AQ9UPZ6 1657 aa11.4□□□□□ -0.59
CPNE4-213ENST00000515418 TBC1D2BQ9UPU7 963 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 A0A087WZG4 1122 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 CRKLP46109 303 aaKnown RBP11.39□□□□□ -0.59
CPNE4-213ENST00000515418 HLFQ16534 295 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 C8orf34Q49A92 452 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 EPHA10Q5JZY3 1008 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 UBE3BQ7Z3V4 1068 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 OTUD7AQ8TE49 926 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-213ENST00000515418 SSH3Q8TE77 659 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 BICC1Q9H694 974 aaKnown RBP11.39□□□□□ -0.59
CPNE4-213ENST00000515418 UTYO14607 1347 aa11.39□□□□□ -0.59
CPNE4-213ENST00000515418 MYH14Q7Z406 1995 aaKnown RBP11.39□□□□□ -0.59
CPNE4-213ENST00000515418 AFDNP55196 1824 aaKnown RBP11.38□□□□□ -0.59
CPNE4-213ENST00000515418 FAM161AQ3B820 660 aa11.38□□□□□ -0.59
CPNE4-213ENST00000515418 SMARCC1Q92922 1105 aaPredicted RBP11.38□□□□□ -0.59
CPNE4-213ENST00000515418 TJP1Q07157 1748 aa11.38□□□□□ -0.59
CPNE4-213ENST00000515418 SURF6O75683 361 aaKnown RBP11.37□□□□□ -0.59
CPNE4-213ENST00000515418 POLA2Q14181 598 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 SMIM5Q71RC9 77 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 CCDC87Q9NVE4 849 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 TCIRG1Q13488 830 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 KIF6Q6ZMV9 814 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 ZBTB47Q9UFB7 747 aaPredicted RBP11.37□□□□□ -0.59
CPNE4-213ENST00000515418 PA2G4Q9UQ80 394 aaKnown RBP11.37□□□□□ -0.59
CPNE4-213ENST00000515418 NUP188Q5SRE5 1749 aa11.37□□□□□ -0.59
CPNE4-213ENST00000515418 GPTP24298 496 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 EIF5P55010 431 aaKnown RBP11.36□□□□□ -0.59
CPNE4-213ENST00000515418 PLEKHM2Q8IWE5 1019 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 LINC00116Q8NCU8 138 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 CWC25Q9NXE8 425 aaPredicted RBP11.36□□□□□ -0.59
CPNE4-213ENST00000515418 MAP3K15Q6ZN16 1313 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 H7C1W4 665 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 IL6STP40189 918 aaPredicted RBP11.36□□□□□ -0.59
CPNE4-213ENST00000515418 CASP7P55210 303 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 NPM2Q86SE8 214 aaKnown RBP11.36□□□□□ -0.59
CPNE4-213ENST00000515418 DZIP3Q86Y13 1208 aaKnown RBP11.36□□□□□ -0.59
CPNE4-213ENST00000515418 KLHDC4Q8TBB5 520 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 IL1RAPL2Q9NP60 686 aa11.36□□□□□ -0.59
CPNE4-213ENST00000515418 BTAF1O14981 1849 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 SEC24BO95487 1268 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 MTX1Q13505 466 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 GIGYF2Q6Y7W6 1299 aaKnown RBP11.35□□□□□ -0.59
CPNE4-213ENST00000515418 SYNE4Q8N205 404 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 CCDC191Q8NCU4 936 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 ISCA1Q9BUE6 129 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 LRRCC1Q9C099 1032 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 HDAC5Q9UQL6 1122 aa11.35□□□□□ -0.59
CPNE4-213ENST00000515418 IBTKQ9P2D0 1353 aaPredicted RBP11.34□□□□□ -0.59
CPNE4-213ENST00000515418 BRWD3Q6RI45 1802 aa11.34□□□□□ -0.59
CPNE4-213ENST00000515418 SBF2Q86WG5 1849 aa11.34□□□□□ -0.59
CPNE4-213ENST00000515418 KRT27Q7Z3Y8 459 aa11.34□□□□□ -0.59
CPNE4-213ENST00000515418 FAM89AQ96GI7 184 aa11.34□□□□□ -0.59
CPNE4-213ENST00000515418 TSHZ3Q63HK5 1081 aa11.34□□□□□ -0.59
CPNE4-213ENST00000515418 FOXO4P98177 505 aa11.33□□□□□ -0.6
CPNE4-213ENST00000515418 ZNF772Q68DY9 489 aaPredicted RBP11.33□□□□□ -0.6
CPNE4-213ENST00000515418 LMBR1LQ6UX01 489 aa11.33□□□□□ -0.6
CPNE4-213ENST00000515418 SIL1Q9H173 461 aa11.33□□□□□ -0.6
CPNE4-213ENST00000515418 NUP98P52948 1817 aa11.33□□□□□ -0.6
CPNE4-213ENST00000515418 TRIM37O94972 964 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 RBM6P78332 1123 aaKnown RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 OS9Q13438 667 aaPredicted RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 NUTM1Q86Y26 1132 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 RHPN1Q8TCX5 695 aa11.32□□□□□ -0.6
CPNE4-213ENST00000515418 BCL11BQ9C0K0 894 aaPredicted RBP11.32□□□□□ -0.6
CPNE4-213ENST00000515418 CCNL1Q9UK58 526 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms