RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RIMS2Q9UQ26 1411 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 PTGS1P23219 599 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 ZBTB40Q9NUA8 1239 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 ARHGEF12Q9NZN5 1544 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 ADGRL2O95490 1459 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 KRT32Q14532 448 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 CCDC57Q2TAC2 916 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.12□□□□□ -0.31
TCOF1-211ENST00000513346 TBX22Q9Y458 520 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 V9GYY5 206 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-211ENST00000513346 STX1AQ16623 288 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 CTR9Q6PD62 1173 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 SAMD1Q6SPF0 538 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 BCL2L12Q9HB09 334 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 PIK3C2GO75747 1445 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 ANKRD36BQ8N2N9 1353 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 ACEP12821 1306 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 FAM83GA6ND36 823 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 PRPF40BQ6NWY9 871 aaKnown RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 INTS4Q96HW7 963 aaKnown RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 MPHOSPH8Q99549 860 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 TFIP11Q9UBB9 837 aaKnown RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 PTCD1O75127 700 aaKnown RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 BRPF1P55201 1214 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-211ENST00000513346 NUTM1Q86Y26 1132 aa13.11□□□□□ -0.31
TCOF1-211ENST00000513346 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 IVLP07476 585 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 NAP1L1P55209 391 aaKnown RBP13.1□□□□□ -0.31
TCOF1-211ENST00000513346 ANO6Q4KMQ2 910 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 TTC39AQ5SRH9 613 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 GNL3LQ9NVN8 582 aaKnown RBP13.1□□□□□ -0.31
TCOF1-211ENST00000513346 SART3Q15020 963 aaKnown RBP13.1□□□□□ -0.31
TCOF1-211ENST00000513346 CRACR2AQ9BSW2 395 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 USP26Q9BXU7 913 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 F6X3S4 739 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 TUBB4AP04350 444 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 CCDC150Q8NCX0 1101 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 TSC1Q92574 1164 aa13.1□□□□□ -0.31
TCOF1-211ENST00000513346 SHTN1A0MZ66 631 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 AMOTQ4VCS5 1084 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 ARHGAP29Q52LW3 1261 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 POTEB2H3BUK9 544 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 TMC6Q7Z403 805 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 LARP6Q9BRS8 491 aaKnown RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 RASSF4Q9H2L5 321 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 ARFGAP3Q9NP61 516 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 MTMR7Q9Y216 660 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 TOP1P11387 765 aaKnown RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 PIP4K2AP48426 406 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 CHRNA2Q15822 529 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 C17orf53Q8N3J3 647 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 DDX11Q96FC9 970 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 VGLL3A8MV65 326 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 RAB11FIP3O75154 756 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 GLRX3O76003 335 aaKnown RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 STARD3NLO95772 234 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 FAM193AP78312 1265 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 TAF7Q15545 349 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-211ENST00000513346 CEP126Q9P2H0 1117 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 SPATA31E1Q6ZUB1 1445 aa13.09□□□□□ -0.31
TCOF1-211ENST00000513346 POLR3AO14802 1390 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-211ENST00000513346 GOLGA6L9A6NEM1 432 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 F13A1P00488 732 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 KIF1BPQ96EK5 621 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 TMEM63CQ9P1W3 806 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 TYRO3Q06418 890 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 MAP9Q49MG5 647 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 ERO1AQ96HE7 468 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 KIF4BQ2VIQ3 1234 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 CEP89Q96ST8 783 aa13.08□□□□□ -0.32
TCOF1-211ENST00000513346 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■■□□ 16.8
TCOF1-211ENST00000513346 KIF5CO60282 957 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 KCNA6P17658 529 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 HSP90AB2PQ58FF8 381 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 SRRTQ9BXP5 876 aaKnown RBP13.07□□□□□ -0.32
TCOF1-211ENST00000513346 EXOC5O00471 708 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 EPB41L2O43491 1005 aaKnown RBP13.07□□□□□ -0.32
TCOF1-211ENST00000513346 CABLES1Q8TDN4 633 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 LRRC59Q96AG4 307 aaKnown RBP13.07□□□□□ -0.32
TCOF1-211ENST00000513346 ESYT1Q9BSJ8 1104 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 MBIPQ9NS73 344 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 XBP1P17861 261 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 AACSQ86V21 672 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 ZRANB1Q9UGI0 708 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
TCOF1-211ENST00000513346 RRP12Q5JTH9 1297 aaKnown RBP13.06□□□□□ -0.32
TCOF1-211ENST00000513346 CENPHQ9H3R5 247 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 IQCEQ6IPM2 695 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 MCM3P25205 808 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 PLEKHM2Q8IWE5 1019 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 ANKRD44Q8N8A2 993 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 ZNHIT6Q9NWK9 470 aaKnown RBP13.06□□□□□ -0.32
TCOF1-211ENST00000513346 DACT1Q9NYF0 836 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 DNAI1Q9UI46 699 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 ERBB4Q15303 1308 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 GOLGA6L10A6NI86 522 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 DNM1Q05193 864 aaKnown RBP13.06□□□□□ -0.32
TCOF1-211ENST00000513346 MPRIPQ6WCQ1 1025 aa13.06□□□□□ -0.32
TCOF1-211ENST00000513346 C10orf67Q8IYJ2 551 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms