RNA–Protein interactions for RNA: ENST00000504841.6

NPIPB3-203, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

APPRIS P1 TSL 1 (best)

Gene NPIPB3, Length 1,254 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-203ENST00000504841 AIDAQ96BJ3 306 aa9.34□□□□□ -0.91
NPIPB3-203ENST00000504841 ZNF496Q96IT1 587 aaPredicted RBP9.34□□□□□ -0.91
NPIPB3-203ENST00000504841 BRIP1Q9BX63 1249 aa9.34□□□□□ -0.91
NPIPB3-203ENST00000504841 PCGF6Q9BYE7 350 aa9.34□□□□□ -0.91
NPIPB3-203ENST00000504841 LTBP3Q9NS15 1303 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 DICER1Q9UPY3 1922 aaKnown RBP9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 ST5P78524 1137 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 CNKSR1Q969H4 720 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 TIMELESSQ9UNS1 1208 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 CNTNAP1P78357 1384 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 HEG1Q9ULI3 1381 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 SLX4Q8IY92 1834 aa9.33□□□□□ -0.92
NPIPB3-203ENST00000504841 IQCA1LA6NCM1 817 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 U2SURPO15042 1029 aaKnown RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 DIAPH1O60610 1272 aaKnown RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 A1BGP04217 495 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 PIP4K2AP48426 406 aaPredicted RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 TRIM26Q12899 539 aaPredicted RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 AMER1Q5JTC6 1135 aaPredicted RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 STYK1Q6J9G0 422 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 LDHDQ86WU2 507 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 DZIP3Q86Y13 1208 aaKnown RBP9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 SETDB2Q96T68 719 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 PDZRN3Q9UPQ7 1066 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 CLEC11AQ9Y240 323 aa9.32□□□□□ -0.92
NPIPB3-203ENST00000504841 ZNF541Q9H0D2 1346 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 CAMTA2O94983 1202 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 SRGNP10124 158 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 IL6STP40189 918 aaPredicted RBP9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 CTCFP49711 727 aaPredicted RBP9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 CCDC93Q567U6 631 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 CC2D1BQ5T0F9 858 aaKnown RBP9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 SOGA3Q5TF21 947 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 ZNF790Q6PG37 636 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 MASTLQ96GX5 879 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 TAF1DQ9H5J8 278 aaPredicted RBP9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 ZNF277Q9NRM2 450 aaPredicted RBP9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 PASKQ96RG2 1323 aa9.31□□□□□ -0.92
NPIPB3-203ENST00000504841 TMEM88BA6NKF7 163 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 FAM177BA6PVY3 158 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 GNAT3A8MTJ3 354 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 VEGFBP49765 207 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 LBX1P52954 281 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 NBPF5PQ86XG9 351 aaPredicted RBP9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 IL17REQ8NFR9 667 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 GAS2L2Q8NHY3 880 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 FMNL2Q96PY5 1086 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 TEX13AQ9BXU3 409 aaPredicted RBP9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 PRDM10Q9NQV6 1147 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 RNF123Q5XPI4 1314 aa9.3□□□□□ -0.92
NPIPB3-203ENST00000504841 BCORQ6W2J9 1755 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 KCNQ3O43525 872 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 EPHX2P34913 555 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 OLFM4Q6UX06 510 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 HACL1Q9UJ83 578 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 ABT1Q9ULW3 272 aaKnown RBP9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 ARFGEF2Q9Y6D5 1785 aa9.29□□□□□ -0.92
NPIPB3-203ENST00000504841 SIPA1L3O60292 1781 aaPredicted RBP9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 FKBP4Q02790 459 aaKnown RBP eCLIP9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 GRM1Q13255 1194 aa9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 MAP1SQ66K74 1059 aaPredicted RBP9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 PAXIP1Q6ZW49 1069 aaPredicted RBP9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 L3MBTL3Q96JM7 780 aaPredicted RBP9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 SCN4AP35499 1836 aa9.28□□□□□ -0.92
NPIPB3-203ENST00000504841 PRAMEF22A3QJZ6 481 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 BTBD11A6QL63 1104 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 ITGBL1O95965 494 aaPredicted RBP9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 NPR1P16066 1061 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 FAM161AQ3B820 660 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 C7orf43Q8WVR3 580 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 WBP1LQ9NX94 342 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 NIP7Q9Y221 180 aaKnown RBP eCLIP9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 ZNF652Q9Y2D9 606 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 USP16Q9Y5T5 823 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 KIF7Q2M1P5 1343 aa9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 COL3A1P02461 1466 aaPredicted RBP9.27□□□□□ -0.93
NPIPB3-203ENST00000504841 HSPA8P11142 646 aaKnown RBP9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 IARSP41252 1262 aaKnown RBP9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 DEFB115Q30KQ5 88 aa9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 CNTROBQ8N137 903 aa9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 ABHD8Q96I13 439 aa9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 GJA3Q9Y6H8 435 aa9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 CLSPNQ9HAW4 1339 aa9.26□□□□□ -0.93
NPIPB3-203ENST00000504841 ADAMTSL1Q8N6G6 1762 aa9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 GTF2E1P29083 439 aaPredicted RBP9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 PRKAR2BP31323 418 aa9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 PNMA8AQ86V59 439 aaPredicted RBP9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 RTKN2Q8IZC4 609 aa9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 SYNE4Q8N205 404 aa9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 WDR33Q9C0J8 1336 aaKnown RBP9.25□□□□□ -0.93
NPIPB3-203ENST00000504841 CEMIPQ8WUJ3 1361 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 RASSF10A6NK89 507 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 LMOD1P29536 600 aaPredicted RBP9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 MAP2K1Q02750 393 aaPredicted RBP9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 FMR1Q06787 632 aaKnown RBP eCLIP9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 CLEC4GQ6UXB4 293 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 TPTE2Q6XPS3 522 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 MCM10Q7L590 875 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 NGEFQ8N5V2 710 aa9.24□□□□□ -0.93
NPIPB3-203ENST00000504841 JDP2Q8WYK2 163 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms