RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CNKSR1Q969H4 720 aa15.38■□□□□ 0.05
COL6A3-213ENST00000493475 VEGFAP15692 232 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-213ENST00000493475 TBC1D9BQ66K14 1250 aa15.37■□□□□ 0.05
COL6A3-213ENST00000493475 CLEC4GQ6UXB4 293 aa15.37■□□□□ 0.05
COL6A3-213ENST00000493475 RRAGCQ9HB90 399 aa15.37■□□□□ 0.05
COL6A3-213ENST00000493475 VIRMAQ69YN4 1812 aaKnown RBP15.37■□□□□ 0.05
COL6A3-213ENST00000493475 RGL2O15211 777 aa15.36■□□□□ 0.05
COL6A3-213ENST00000493475 PPP2R1AP30153 589 aa15.36■□□□□ 0.05
COL6A3-213ENST00000493475 RASSF7Q02833 373 aa15.36■□□□□ 0.05
COL6A3-213ENST00000493475 PNISRQ8TF01 805 aaKnown RBP15.36■□□□□ 0.05
COL6A3-213ENST00000493475 NRXN2Q9P2S2 1712 aa15.36■□□□□ 0.05
COL6A3-213ENST00000493475 TNRC6CQ9HCJ0 1690 aaKnown RBP15.35■□□□□ 0.05
COL6A3-213ENST00000493475 GLTPD2A6NH11 291 aa15.35■□□□□ 0.05
COL6A3-213ENST00000493475 A1BGP04217 495 aa15.35■□□□□ 0.05
COL6A3-213ENST00000493475 PRR5LQ6MZQ0 368 aa15.35■□□□□ 0.05
COL6A3-213ENST00000493475 NBPF5PQ86XG9 351 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-213ENST00000493475 PHACTR3Q96KR7 559 aa15.35■□□□□ 0.05
COL6A3-213ENST00000493475 STYK1Q6J9G0 422 aa15.34■□□□□ 0.05
COL6A3-213ENST00000493475 TAOK3Q9H2K8 898 aa15.34■□□□□ 0.05
COL6A3-213ENST00000493475 SCN7AQ01118 1682 aa15.34■□□□□ 0.05
COL6A3-213ENST00000493475 GTF2E1P29083 439 aaPredicted RBP15.33■□□□□ 0.04
COL6A3-213ENST00000493475 ERFEQ4G0M1 354 aa15.33■□□□□ 0.04
COL6A3-213ENST00000493475 TPTE2Q6XPS3 522 aa15.33■□□□□ 0.04
COL6A3-213ENST00000493475 MASTLQ96GX5 879 aa15.33■□□□□ 0.04
COL6A3-213ENST00000493475 AFDNP55196 1824 aaKnown RBP15.33■□□□□ 0.04
COL6A3-213ENST00000493475 DLEC1Q9Y238 1755 aa15.32■□□□□ 0.04
COL6A3-213ENST00000493475 C21orf2O43822 256 aa15.32■□□□□ 0.04
COL6A3-213ENST00000493475 CAMTA2O94983 1202 aa15.32■□□□□ 0.04
COL6A3-213ENST00000493475 TAF7Q15545 349 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-213ENST00000493475 MCM10Q7L590 875 aa15.32■□□□□ 0.04
COL6A3-213ENST00000493475 MAPK8IP3Q9UPT6 1336 aa15.32■□□□□ 0.04
COL6A3-213ENST00000493475 USP16Q9Y5T5 823 aa15.31■□□□□ 0.04
COL6A3-213ENST00000493475 LTBP3Q9NS15 1303 aa15.31■□□□□ 0.04
COL6A3-213ENST00000493475 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-213ENST00000493475 PITPNM1O00562 1244 aa15.3■□□□□ 0.04
COL6A3-213ENST00000493475 SRGNP10124 158 aa15.3■□□□□ 0.04
COL6A3-213ENST00000493475 PRPF40BQ6NWY9 871 aaKnown RBP15.3■□□□□ 0.04
COL6A3-213ENST00000493475 KLRG1Q96E93 195 aa15.3■□□□□ 0.04
COL6A3-213ENST00000493475 NFKBIEO00221 500 aa15.29■□□□□ 0.04
COL6A3-213ENST00000493475 NPR1P16066 1061 aa15.29■□□□□ 0.04
COL6A3-213ENST00000493475 CCDC93Q567U6 631 aa15.29■□□□□ 0.04
COL6A3-213ENST00000493475 KIF6Q6ZMV9 814 aa15.29■□□□□ 0.04
COL6A3-213ENST00000493475 NYXQ9GZU5 481 aa15.29■□□□□ 0.04
COL6A3-213ENST00000493475 NIP7Q9Y221 180 aaKnown RBP eCLIP15.29■□□□□ 0.04
COL6A3-213ENST00000493475 IQCA1LA6NCM1 817 aa15.28■□□□□ 0.04
COL6A3-213ENST00000493475 KCNQ3O43525 872 aa15.28■□□□□ 0.04
COL6A3-213ENST00000493475 ALDH1B1P30837 517 aa15.28■□□□□ 0.04
COL6A3-213ENST00000493475 FXR2P51116 673 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL6A3-213ENST00000493475 DNAJC5GQ8N7S2 189 aa15.28■□□□□ 0.04
COL6A3-213ENST00000493475 WDR90Q96KV7 1748 aa15.27■□□□□ 0.04
COL6A3-213ENST00000493475 RTKN2Q8IZC4 609 aa15.27■□□□□ 0.04
COL6A3-213ENST00000493475 CCDC24Q8N4L8 307 aa15.27■□□□□ 0.04
COL6A3-213ENST00000493475 SBF1O95248 1867 aa15.27■□□□□ 0.03
COL6A3-213ENST00000493475 DCTN1Q14203 1278 aa15.26■□□□□ 0.03
COL6A3-213ENST00000493475 TMX4Q9H1E5 349 aaPredicted RBP15.26■□□□□ 0.03
COL6A3-213ENST00000493475 TIAM2Q8IVF5 1701 aa15.26■□□□□ 0.03
COL6A3-213ENST00000493475 PIP4K2AP48426 406 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-213ENST00000493475 BCORQ6W2J9 1755 aa15.24■□□□□ 0.03
COL6A3-213ENST00000493475 ERVV-1B6SEH8 477 aa15.24■□□□□ 0.03
COL6A3-213ENST00000493475 LMOD3Q0VAK6 560 aa15.24■□□□□ 0.03
COL6A3-213ENST00000493475 NFE2L2Q16236 605 aa15.24■□□□□ 0.03
COL6A3-213ENST00000493475 GRIPAP1Q4V328 841 aa15.24■□□□□ 0.03
COL6A3-213ENST00000493475 PRAMEF22A3QJZ6 481 aa15.23■□□□□ 0.03
COL6A3-213ENST00000493475 FAM177BA6PVY3 158 aa15.23■□□□□ 0.03
COL6A3-213ENST00000493475 FKBP4Q02790 459 aaKnown RBP eCLIP15.23■□□□□ 0.03
COL6A3-213ENST00000493475 CC2D2BQ6DHV5 1058 aa15.23■□□□□ 0.03
COL6A3-213ENST00000493475 JMYQ8N9B5 988 aa15.23■□□□□ 0.03
COL6A3-213ENST00000493475 ERBB4Q15303 1308 aa15.22■□□□□ 0.03
COL6A3-213ENST00000493475 CHADLQ6NUI6 762 aa15.22■□□□□ 0.03
COL6A3-213ENST00000493475 JDP2Q8WYK2 163 aa15.22■□□□□ 0.03
COL6A3-213ENST00000493475 RPGRQ92834 1020 aaKnown RBP15.22■□□□□ 0.03
COL6A3-213ENST00000493475 ANKRD31Q8N7Z5 1873 aa15.22■□□□□ 0.03
COL6A3-213ENST00000493475 KLRG2A4D1S0 409 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-213ENST00000493475 NBPF26B4DH59 902 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 PRELPP51888 382 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 RALBP1Q15311 655 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 NBPF10Q6P3W6 841 aaKnown RBP15.21■□□□□ 0.03
COL6A3-213ENST00000493475 NGEFQ8N5V2 710 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 NBPF15Q8N660 670 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 MIS18AQ9NYP9 233 aa15.21■□□□□ 0.03
COL6A3-213ENST00000493475 RRP7AQ9Y3A4 280 aaKnown RBP15.21■□□□□ 0.03
COL6A3-213ENST00000493475 COL11A2P13942 1736 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-213ENST00000493475 MAP3K15Q6ZN16 1313 aa15.2■□□□□ 0.02
COL6A3-213ENST00000493475 HAX1O00165 279 aa15.2■□□□□ 0.02
COL6A3-213ENST00000493475 HTRA3P83110 453 aa15.2■□□□□ 0.02
COL6A3-213ENST00000493475 PPP1R42Q7Z4L9 355 aa15.2■□□□□ 0.02
COL6A3-213ENST00000493475 TSPYL4Q9UJ04 414 aa15.2■□□□□ 0.02
COL6A3-213ENST00000493475 IBTKQ9P2D0 1353 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-213ENST00000493475 FER1L6Q2WGJ9 1857 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 DDNO94850 711 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-213ENST00000493475 MYL6BP14649 208 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 EIF4A1P60842 406 aaKnown RBP15.19■□□□□ 0.02
COL6A3-213ENST00000493475 PARP10Q53GL7 1025 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 LDHDQ86WU2 507 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 BABAM1Q9NWV8 329 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 LAMB4A4D0S4 1761 aa15.19■□□□□ 0.02
COL6A3-213ENST00000493475 ZBTB22O15209 634 aa15.18■□□□□ 0.02
COL6A3-213ENST00000493475 PNMA8AQ86V59 439 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-213ENST00000493475 RBM17Q96I25 401 aaKnown RBP15.18■□□□□ 0.02
COL6A3-213ENST00000493475 L3MBTL3Q96JM7 780 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms