RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 NEXNQ0ZGT2 675 aa17.37■□□□□ 0.37
SMPD4-219ENST00000491128 C8orf34Q49A92 452 aa17.37■□□□□ 0.37
SMPD4-219ENST00000491128 ITGB4P16144 1822 aa17.37■□□□□ 0.37
SMPD4-219ENST00000491128 SRGAP3O43295 1099 aa17.36■□□□□ 0.37
SMPD4-219ENST00000491128 CYP19A1P11511 503 aaPredicted RBP17.36■□□□□ 0.37
SMPD4-219ENST00000491128 ATP8B2P98198 1209 aa17.36■□□□□ 0.37
SMPD4-219ENST00000491128 SUCLG2Q96I99 432 aa17.36■□□□□ 0.37
SMPD4-219ENST00000491128 STARD3NLO95772 234 aa17.36■□□□□ 0.37
SMPD4-219ENST00000491128 GRM8O00222 908 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 ITPK1Q13572 414 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 SEPT12Q8IYM1 358 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 PXDNLA1KZ92 1463 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 DOT1LQ8TEK3 1739 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 LOC102724428A0A0B4J2F2 783 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 SIK1P57059 783 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 GCKRQ14397 625 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 PLBD2Q8NHP8 589 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 KAZALD1Q96I82 304 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 TBC1D2BQ9UPU7 963 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 UBE3BQ7Z3V4 1068 aa17.35■□□□□ 0.37
SMPD4-219ENST00000491128 WNK3Q9BYP7 1800 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 CACNA1FO60840 1977 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 ALDH1L1O75891 902 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 EPHA10Q5JZY3 1008 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 BICC1Q9H694 974 aaKnown RBP17.34■□□□□ 0.37
SMPD4-219ENST00000491128 TRPC5Q9UL62 973 aaPredicted RBP17.34■□□□□ 0.37
SMPD4-219ENST00000491128 PA2G4Q9UQ80 394 aaKnown RBP17.34■□□□□ 0.37
SMPD4-219ENST00000491128 UBR2Q8IWV8 1755 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 HMMRO75330 724 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 SEC24BO95487 1268 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 TSHZ3Q63HK5 1081 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 VSIG10Q8N0Z9 540 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 KLHDC4Q8TBB5 520 aa17.34■□□□□ 0.37
SMPD4-219ENST00000491128 PAPPAQ13219 1627 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 A0A087WZG4 1122 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 HLFQ16534 295 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 FAM161AQ3B820 660 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 PALLDQ8WX93 1383 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 IL1RAPL2Q9NP60 686 aa17.33■□□□□ 0.36
SMPD4-219ENST00000491128 SURF6O75683 361 aaKnown RBP17.32■□□□□ 0.36
SMPD4-219ENST00000491128 GPTP24298 496 aa17.32■□□□□ 0.36
SMPD4-219ENST00000491128 TEX13AQ9BXU3 409 aaPredicted RBP17.32■□□□□ 0.36
SMPD4-219ENST00000491128 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
SMPD4-219ENST00000491128 CRKLP46109 303 aaKnown RBP17.3■□□□□ 0.36
SMPD4-219ENST00000491128 SYNE4Q8N205 404 aa17.3■□□□□ 0.36
SMPD4-219ENST00000491128 ERBB4Q15303 1308 aa17.3■□□□□ 0.36
SMPD4-219ENST00000491128 SSH3Q8TE77 659 aa17.3■□□□□ 0.36
SMPD4-219ENST00000491128 SIL1Q9H173 461 aa17.3■□□□□ 0.36
SMPD4-219ENST00000491128 INTS5Q6P9B9 1019 aaKnown RBP17.29■□□□□ 0.36
SMPD4-219ENST00000491128 PLEKHM2Q8IWE5 1019 aa17.29■□□□□ 0.36
SMPD4-219ENST00000491128 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
SMPD4-219ENST00000491128 KIF6Q6ZMV9 814 aa17.28■□□□□ 0.36
SMPD4-219ENST00000491128 CCDC85AQ96PX6 553 aaPredicted RBP17.28■□□□□ 0.36
SMPD4-219ENST00000491128 CHMP3Q9Y3E7 222 aa17.28■□□□□ 0.36
SMPD4-219ENST00000491128 ATRNO75882 1429 aa17.27■□□□□ 0.36
SMPD4-219ENST00000491128 POLA2Q14181 598 aa17.27■□□□□ 0.36
SMPD4-219ENST00000491128 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.27■□□□□ 0.36
SMPD4-219ENST00000491128 LAMB4A4D0S4 1761 aa17.27■□□□□ 0.35
SMPD4-219ENST00000491128 DZIP3Q86Y13 1208 aaKnown RBP17.27■□□□□ 0.35
SMPD4-219ENST00000491128 LINC00116Q8NCU8 138 aa17.27■□□□□ 0.35
SMPD4-219ENST00000491128 FAM89AQ96GI7 184 aa17.27■□□□□ 0.35
SMPD4-219ENST00000491128 LRRCC1Q9C099 1032 aa17.27■□□□□ 0.35
SMPD4-219ENST00000491128 OS9Q13438 667 aaPredicted RBP17.26■□□□□ 0.35
SMPD4-219ENST00000491128 NUTM1Q86Y26 1132 aa17.26■□□□□ 0.35
SMPD4-219ENST00000491128 CCDC87Q9NVE4 849 aa17.26■□□□□ 0.35
SMPD4-219ENST00000491128 CWC25Q9NXE8 425 aaPredicted RBP17.26■□□□□ 0.35
SMPD4-219ENST00000491128 UTYO14607 1347 aa17.25■□□□□ 0.35
SMPD4-219ENST00000491128 GSPT1P15170 499 aaKnown RBP17.25■□□□□ 0.35
SMPD4-219ENST00000491128 ONECUT3O60422 494 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-219ENST00000491128 TCIRG1Q13488 830 aa17.25■□□□□ 0.35
SMPD4-219ENST00000491128 IBTKQ9P2D0 1353 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-219ENST00000491128 MAP3K15Q6ZN16 1313 aa17.24■□□□□ 0.35
SMPD4-219ENST00000491128 CASP7P55210 303 aa17.24■□□□□ 0.35
SMPD4-219ENST00000491128 LMBR1LQ6UX01 489 aa17.24■□□□□ 0.35
SMPD4-219ENST00000491128 RHPN1Q8TCX5 695 aa17.23■□□□□ 0.35
SMPD4-219ENST00000491128 SMARCC1Q92922 1105 aaPredicted RBP17.23■□□□□ 0.35
SMPD4-219ENST00000491128 IL6STP40189 918 aaPredicted RBP17.23■□□□□ 0.35
SMPD4-219ENST00000491128 EIF5P55010 431 aaKnown RBP17.23■□□□□ 0.35
SMPD4-219ENST00000491128 GIGYF2Q6Y7W6 1299 aaKnown RBP17.23■□□□□ 0.35
SMPD4-219ENST00000491128 AMIGO3Q86WK7 504 aa17.23■□□□□ 0.35
SMPD4-219ENST00000491128 ARFGEF2Q9Y6D5 1785 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 H7C1W4 665 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 TRIM37O94972 964 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 ANP32EQ9BTT0 268 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 CCDC191Q8NCU4 936 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 ISCA1Q9BUE6 129 aa17.22■□□□□ 0.35
SMPD4-219ENST00000491128 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.21■□□□□ 0.35
SMPD4-219ENST00000491128 MTX1Q13505 466 aa17.21■□□□□ 0.35
SMPD4-219ENST00000491128 CCNL1Q9UK58 526 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-219ENST00000491128 THSD7AQ9UPZ6 1657 aa17.21■□□□□ 0.35
SMPD4-219ENST00000491128 FOXO4P98177 505 aa17.21■□□□□ 0.35
SMPD4-219ENST00000491128 KRT27Q7Z3Y8 459 aa17.21■□□□□ 0.35
SMPD4-219ENST00000491128 ZNF594Q96JF6 807 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-219ENST00000491128 MAP4K4O95819 1239 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-219ENST00000491128 N4BP2Q86UW6 1770 aaPredicted RBP17.2■□□□□ 0.34
SMPD4-219ENST00000491128 TJP1Q07157 1748 aa17.2■□□□□ 0.34
SMPD4-219ENST00000491128 PDE1AP54750 535 aa17.2■□□□□ 0.34
SMPD4-219ENST00000491128 MFAP1P55081 439 aaKnown RBP17.2■□□□□ 0.34
SMPD4-219ENST00000491128 NLRP10Q86W26 655 aa17.19■□□□□ 0.34
SMPD4-219ENST00000491128 UBN2Q6ZU65 1347 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms