RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 SYTL4Q96C24 671 aaPredicted RBP32.58■■■□□ 2.81
SHOX2-204ENST00000483851 KAT6BQ8WYB5 2073 aa32.58■■■□□ 2.81
SHOX2-204ENST00000483851 FAM98CQ17RN3 349 aaKnown RBP32.57■■■□□ 2.8
SHOX2-204ENST00000483851 RBM42Q9BTD8 480 aaKnown RBP32.57■■■□□ 2.8
SHOX2-204ENST00000483851 NUP188Q5SRE5 1749 aa32.56■■■□□ 2.8
SHOX2-204ENST00000483851 PIP4K2AP48426 406 aaPredicted RBP32.56■■■□□ 2.8
SHOX2-204ENST00000483851 GCKRQ14397 625 aa32.56■■■□□ 2.8
SHOX2-204ENST00000483851 DNAJC10Q8IXB1 793 aa32.56■■■□□ 2.8
SHOX2-204ENST00000483851 MYD88Q99836 296 aa32.56■■■□□ 2.8
SHOX2-204ENST00000483851 PPP1R42Q7Z4L9 355 aa32.55■■■□□ 2.8
SHOX2-204ENST00000483851 BMP2KLQ5H9B9 411 aa32.54■■■□□ 2.8
SHOX2-204ENST00000483851 MEX3CQ5U5Q3 659 aaKnown RBP32.54■■■□□ 2.8
SHOX2-204ENST00000483851 COL15A1P39059 1388 aa32.54■■■□□ 2.8
SHOX2-204ENST00000483851 THSD7AQ9UPZ6 1657 aa32.54■■■□□ 2.8
SHOX2-204ENST00000483851 CICQ96RK0 1608 aaPredicted RBP32.54■■■□□ 2.8
SHOX2-204ENST00000483851 RAB11FIP3O75154 756 aa32.52■■■□□ 2.8
SHOX2-204ENST00000483851 AFDNP55196 1824 aaKnown RBP32.52■■■□□ 2.8
SHOX2-204ENST00000483851 SRGAP3O43295 1099 aa32.51■■■□□ 2.79
SHOX2-204ENST00000483851 TJP1Q07157 1748 aa32.51■■■□□ 2.79
SHOX2-204ENST00000483851 HSP90AB4PQ58FF6 505 aa32.5■■■□□ 2.79
SHOX2-204ENST00000483851 LRRCC1Q9C099 1032 aa32.5■■■□□ 2.79
SHOX2-204ENST00000483851 CYP19A1P11511 503 aaPredicted RBP32.5■■■□□ 2.79
SHOX2-204ENST00000483851 PLEKHM2Q8IWE5 1019 aa32.5■■■□□ 2.79
SHOX2-204ENST00000483851 SMARCC1Q92922 1105 aaPredicted RBP32.5■■■□□ 2.79
SHOX2-204ENST00000483851 TTLL7Q6ZT98 887 aa32.49■■■□□ 2.79
SHOX2-204ENST00000483851 SLC4A9Q96Q91 983 aa32.49■■■□□ 2.79
SHOX2-204ENST00000483851 EXOC6BQ9Y2D4 811 aa32.48■■■□□ 2.79
SHOX2-204ENST00000483851 ZNF831Q5JPB2 1677 aa32.46■■■□□ 2.79
SHOX2-204ENST00000483851 GJD4Q96KN9 370 aaPredicted RBP32.46■■■□□ 2.79
SHOX2-204ENST00000483851 SUCLG2Q96I99 432 aa32.46■■■□□ 2.79
SHOX2-204ENST00000483851 AFF2P51816 1311 aa32.46■■■□□ 2.79
SHOX2-204ENST00000483851 ATRNO75882 1429 aa32.45■■■□□ 2.79
SHOX2-204ENST00000483851 ACSBG1Q96GR2 724 aa32.45■■■□□ 2.79
SHOX2-204ENST00000483851 OSBPL3Q9H4L5 887 aa32.45■■■□□ 2.79
SHOX2-204ENST00000483851 CCDC191Q8NCU4 936 aa32.44■■■□□ 2.78
SHOX2-204ENST00000483851 KAZALD1Q96I82 304 aa32.44■■■□□ 2.78
SHOX2-204ENST00000483851 KIF6Q6ZMV9 814 aa32.44■■■□□ 2.78
SHOX2-204ENST00000483851 TRPC5Q9UL62 973 aaPredicted RBP32.44■■■□□ 2.78
SHOX2-204ENST00000483851 ONECUT3O60422 494 aaPredicted RBP32.43■■■□□ 2.78
SHOX2-204ENST00000483851 SURF6O75683 361 aaKnown RBP32.43■■■□□ 2.78
SHOX2-204ENST00000483851 TRIM28Q13263 835 aaKnown RBP32.42■■■□□ 2.78
SHOX2-204ENST00000483851 DDRGK1Q96HY6 314 aa32.42■■■□□ 2.78
SHOX2-204ENST00000483851 SMARCA5O60264 1052 aaPredicted RBP32.42■■■□□ 2.78
SHOX2-204ENST00000483851 IL6STP40189 918 aaPredicted RBP32.42■■■□□ 2.78
SHOX2-204ENST00000483851 CWC25Q9NXE8 425 aaPredicted RBP32.42■■■□□ 2.78
SHOX2-204ENST00000483851 APBB1O00213 710 aa32.41■■■□□ 2.78
SHOX2-204ENST00000483851 KIF1BPQ96EK5 621 aa32.41■■■□□ 2.78
SHOX2-204ENST00000483851 BICC1Q9H694 974 aaKnown RBP32.41■■■□□ 2.78
SHOX2-204ENST00000483851 PALLDQ8WX93 1383 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 LOC102724428A0A0B4J2F2 783 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 SIK1P57059 783 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 A0A087WZG4 1122 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 ATP5J2-PTCD1G3V325 749 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 H7C1W4 665 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 TTC22Q5TAA0 569 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 C16orf71Q8IYS4 520 aaPredicted RBP32.4■■■□□ 2.78
SHOX2-204ENST00000483851 ZBTB3Q9H5J0 574 aa32.4■■■□□ 2.78
SHOX2-204ENST00000483851 RREB1Q92766 1687 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 MAP3K15Q6ZN16 1313 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 CASP7P55210 303 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 TCIRG1Q13488 830 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 ERC1Q8IUD2 1116 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 ISCA1Q9BUE6 129 aa32.39■■■□□ 2.78
SHOX2-204ENST00000483851 UPF2Q9HAU5 1272 aaKnown RBP32.38■■■□□ 2.77
SHOX2-204ENST00000483851 A0A0G2JS52 829 aa32.37■■■□□ 2.77
SHOX2-204ENST00000483851 EIF5BO60841 1220 aaKnown RBP32.37■■■□□ 2.77
SHOX2-204ENST00000483851 RABL6Q3YEC7 729 aaPredicted RBP32.37■■■□□ 2.77
SHOX2-204ENST00000483851 SALL3Q9BXA9 1300 aa32.37■■■□□ 2.77
SHOX2-204ENST00000483851 ATP6V1AP38606 617 aa32.37■■■□□ 2.77
SHOX2-204ENST00000483851 HSP90AB3PQ58FF7 597 aa32.37■■■□□ 2.77
SHOX2-204ENST00000483851 RHPN1Q8TCX5 695 aa32.37■■■□□ 2.77
SHOX2-204ENST00000483851 UBE3BQ7Z3V4 1068 aa32.36■■■□□ 2.77
SHOX2-204ENST00000483851 ZBTB1Q9Y2K1 713 aa32.36■■■□□ 2.77
SHOX2-204ENST00000483851 GIGYF2Q6Y7W6 1299 aaKnown RBP32.35■■■□□ 2.77
SHOX2-204ENST00000483851 ERVV-1B6SEH8 477 aa32.35■■■□□ 2.77
SHOX2-204ENST00000483851 PDE1AP54750 535 aa32.35■■■□□ 2.77
SHOX2-204ENST00000483851 NHSQ6T4R5 1651 aa32.35■■■□□ 2.77
SHOX2-204ENST00000483851 AOX1Q06278 1338 aa32.34■■■□□ 2.77
SHOX2-204ENST00000483851 CCDC87Q9NVE4 849 aa32.34■■■□□ 2.77
SHOX2-204ENST00000483851 STAP2Q9UGK3 403 aa32.34■■■□□ 2.77
SHOX2-204ENST00000483851 KCNQ2O43526 872 aa32.33■■■□□ 2.77
SHOX2-204ENST00000483851 OTUD7AQ8TE49 926 aaPredicted RBP32.33■■■□□ 2.77
SHOX2-204ENST00000483851 GSPT1P15170 499 aaKnown RBP32.33■■■□□ 2.77
SHOX2-204ENST00000483851 ZNF330Q9Y3S2 320 aaPredicted RBP32.33■■■□□ 2.77
SHOX2-204ENST00000483851 SEC24BO95487 1268 aa32.32■■■□□ 2.76
SHOX2-204ENST00000483851 MX1P20591 662 aa32.31■■■□□ 2.76
SHOX2-204ENST00000483851 EIF5P55010 431 aaKnown RBP32.31■■■□□ 2.76
SHOX2-204ENST00000483851 INTS5Q6P9B9 1019 aaKnown RBP32.31■■■□□ 2.76
SHOX2-204ENST00000483851 COL5A3P25940 1745 aaPredicted RBP32.3■■■□□ 2.76
SHOX2-204ENST00000483851 ANKRD36CQ5JPF3 1778 aa32.3■■■□□ 2.76
SHOX2-204ENST00000483851 EPHA10Q5JZY3 1008 aa32.3■■■□□ 2.76
SHOX2-204ENST00000483851 OS9Q13438 667 aaPredicted RBP32.29■■■□□ 2.76
SHOX2-204ENST00000483851 CDC45O75419 566 aa32.29■■■□□ 2.76
SHOX2-204ENST00000483851 CRKLP46109 303 aaKnown RBP32.29■■■□□ 2.76
SHOX2-204ENST00000483851 COPRSQ9NQ92 184 aa32.29■■■□□ 2.76
SHOX2-204ENST00000483851 ITPK1Q13572 414 aa32.28■■■□□ 2.76
SHOX2-204ENST00000483851 G3BP1Q13283 466 aaKnown RBP eCLIP32.27■■■□□ 2.76
SHOX2-204ENST00000483851 DZIP3Q86Y13 1208 aaKnown RBP32.27■■■□□ 2.76
SHOX2-204ENST00000483851 PCCAP05165 728 aaPredicted RBP32.26■■■□□ 2.75
SHOX2-204ENST00000483851 QTRT2Q9H974 415 aaKnown RBP32.26■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms