RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-204	ENST00000480057	EIF5B	O60841	1220 aa	Known RBP	13.67	□□□□□ -0.22
VTI1A-204	ENST00000480057	IGKV5-2	P06315	115 aa		13.67	□□□□□ -0.22
VTI1A-204	ENST00000480057	CACNB1	Q02641	598 aa	Predicted RBP	13.67	□□□□□ -0.22
VTI1A-204	ENST00000480057	GCKR	Q14397	625 aa		13.67	□□□□□ -0.22
VTI1A-204	ENST00000480057	TJP1	Q07157	1748 aa		13.67	□□□□□ -0.22
VTI1A-204	ENST00000480057	HSPA1L	P34931	641 aa		13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	PRIM1	P49642	420 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	CWF19L2	Q2TBE0	894 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	PPP1R42	Q7Z4L9	355 aa		13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	SMARCC1	Q92922	1105 aa	Predicted RBP	13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	USP21	Q9UK80	565 aa		13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	NOP58	Q9Y2X3	529 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	AFDN	P55196	1824 aa	Known RBP	13.66	□□□□□ -0.22
VTI1A-204	ENST00000480057	A1BG	P04217	495 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	PLEKHM2	Q8IWE5	1019 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	DNAJC10	Q8IXB1	793 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	MYD88	Q99836	296 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	LRRCC1	Q9C099	1032 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	OSBPL3	Q9H4L5	887 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	RREB1	Q92766	1687 aa		13.65	□□□□□ -0.22
VTI1A-204	ENST00000480057	SRGAP3	O43295	1099 aa		13.64	□□□□□ -0.23
VTI1A-204	ENST00000480057	CYP19A1	P11511	503 aa	Predicted RBP	13.64	□□□□□ -0.23
VTI1A-204	ENST00000480057	RBM42	Q9BTD8	480 aa	Known RBP	13.64	□□□□□ -0.23
VTI1A-204	ENST00000480057	ATRN	O75882	1429 aa		13.64	□□□□□ -0.23
VTI1A-204	ENST00000480057	TRIM28	Q13263	835 aa	Known RBP	13.63	□□□□□ -0.23
VTI1A-204	ENST00000480057	FAM98C	Q17RN3	349 aa	Known RBP	13.63	□□□□□ -0.23
VTI1A-204	ENST00000480057	MEX3C	Q5U5Q3	659 aa	Known RBP	13.63	□□□□□ -0.23
VTI1A-204	ENST00000480057	CCDC191	Q8NCU4	936 aa		13.63	□□□□□ -0.23
VTI1A-204	ENST00000480057	AOX1	Q06278	1338 aa		13.63	□□□□□ -0.23
VTI1A-204	ENST00000480057	IL6ST	P40189	918 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	TTC22	Q5TAA0	569 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	KIF6	Q6ZMV9	814 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	ERC1	Q8IUD2	1116 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	SYTL4	Q96C24	671 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	KIF1BP	Q96EK5	621 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	SUCLG2	Q96I99	432 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	UPF2	Q9HAU5	1272 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	EXOC6B	Q9Y2D4	811 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	SALL3	Q9BXA9	1300 aa		13.62	□□□□□ -0.23
VTI1A-204	ENST00000480057	NHS	Q6T4R5	1651 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057		H7C1W4	665 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	ONECUT3	O60422	494 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	SURF6	O75683	361 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	PIP4K2A	P48426	406 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	RABL6	Q3YEC7	729 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	HSP90AB3P	Q58FF7	597 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	TTLL7	Q6ZT98	887 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	KAZALD1	Q96I82	304 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	GJD4	Q96KN9	370 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	SLC4A9	Q96Q91	983 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	ISCA1	Q9BUE6	129 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	CWC25	Q9NXE8	425 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	TRPC5	Q9UL62	973 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	MAP3K15	Q6ZN16	1313 aa		13.61	□□□□□ -0.23
VTI1A-204	ENST00000480057	CASP7	P55210	303 aa		13.6	□□□□□ -0.23
VTI1A-204	ENST00000480057	TCIRG1	Q13488	830 aa		13.6	□□□□□ -0.23
VTI1A-204	ENST00000480057	DDRGK1	Q96HY6	314 aa		13.6	□□□□□ -0.23
VTI1A-204	ENST00000480057	STAP2	Q9UGK3	403 aa		13.6	□□□□□ -0.23
VTI1A-204	ENST00000480057	PALLD	Q8WX93	1383 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	ANKRD36C	Q5JPF3	1778 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057		A0A087WZG4	1122 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	LOC102724428	A0A0B4J2F2	783 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	ERVV-1	B6SEH8	477 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	SIK1	P57059	783 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	RHPN1	Q8TCX5	695 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	IPO9	Q96P70	1041 aa	Known RBP	13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	BICC1	Q9H694	974 aa	Known RBP	13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	AFF2	P51816	1311 aa		13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	COL5A3	P25940	1745 aa	Predicted RBP	13.59	□□□□□ -0.23
VTI1A-204	ENST00000480057	RGL2	O15211	777 aa		13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	SMARCA5	O60264	1052 aa	Predicted RBP	13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	CDC45	O75419	566 aa		13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	PDE1A	P54750	535 aa		13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	USP42	Q9H9J4	1324 aa	Known RBP	13.58	□□□□□ -0.24
VTI1A-204	ENST00000480057	GSPT1	P15170	499 aa	Known RBP	13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	MX1	P20591	662 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	UBE3B	Q7Z3V4	1068 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	ACSBG1	Q96GR2	724 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	ZBTB3	Q9H5J0	574 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	COPRS	Q9NQ92	184 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	CCDC87	Q9NVE4	849 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	TUBGCP6	Q96RT7	1819 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	KAT6B	Q8WYB5	2073 aa		13.57	□□□□□ -0.24
VTI1A-204	ENST00000480057	ATP5J2-PTCD1	G3V325	749 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	APBB1	O00213	710 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	ATP6V1A	P38606	617 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	EIF5	P55010	431 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	NPM2	Q86SE8	214 aa	Known RBP	13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	TBC1D32	Q96NH3	1257 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	PLA2G12B	Q9BX93	195 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	ZBTB1	Q9Y2K1	713 aa		13.56	□□□□□ -0.24
VTI1A-204	ENST00000480057	SEC24B	O95487	1268 aa		13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	PCCA	P05165	728 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	OS9	Q13438	667 aa	Predicted RBP	13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	INTS5	Q6P9B9	1019 aa	Known RBP	13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	CASC1	Q6TDU7	716 aa		13.55	□□□□□ -0.24
VTI1A-204	ENST00000480057	CLASRP	Q8N2M8	674 aa	Known RBP	13.55	□□□□□ -0.24

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