RNA–Protein interactions for RNA: ENST00000475464.1

PTP4A2-204, Transcript of protein tyrosine phosphatase type IVA, member 2, human

TSL 3

Gene PTP4A2, Length 366 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTP4A2-204	ENST00000475464	PRKAR2B	P31323	418 aa		13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	RTF1	Q92541	710 aa	Known RBP	13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	PHACTR3	Q96KR7	559 aa		13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	CFAP53	Q96M91	514 aa		13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	ZNF652	Q9Y2D9	606 aa		13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	USP16	Q9Y5T5	823 aa		13.65	□□□□□ -0.22
PTP4A2-204	ENST00000475464	IQCA1L	A6NCM1	817 aa		13.64	□□□□□ -0.23
PTP4A2-204	ENST00000475464	CLEC4G	Q6UXB4	293 aa		13.64	□□□□□ -0.23
PTP4A2-204	ENST00000475464	NUDC	Q9Y266	331 aa		13.64	□□□□□ -0.23
PTP4A2-204	ENST00000475464	FAM177B	A6PVY3	158 aa		13.63	□□□□□ -0.23
PTP4A2-204	ENST00000475464	SNRPA1	P09661	255 aa	Known RBP	13.63	□□□□□ -0.23
PTP4A2-204	ENST00000475464	NPR1	P16066	1061 aa		13.63	□□□□□ -0.23
PTP4A2-204	ENST00000475464	CCDC93	Q567U6	631 aa		13.63	□□□□□ -0.23
PTP4A2-204	ENST00000475464	TPTE2	Q6XPS3	522 aa		13.63	□□□□□ -0.23
PTP4A2-204	ENST00000475464	CEMIP	Q8WUJ3	1361 aa		13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	PRAMEF22	A3QJZ6	481 aa		13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	GTF2E1	P29083	439 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	EAPP	Q56P03	285 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	LDHD	Q86WU2	507 aa		13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	RSPH6A	Q9H0K4	717 aa		13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	CLEC11A	Q9Y240	323 aa		13.62	□□□□□ -0.23
PTP4A2-204	ENST00000475464	NPC1L1	Q9UHC9	1359 aa		13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	DLEC1	Q9Y238	1755 aa		13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	MCM10	Q7L590	875 aa		13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	C7orf43	Q8WVR3	580 aa		13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.61	□□□□□ -0.23
PTP4A2-204	ENST00000475464	RTKN2	Q8IZC4	609 aa		13.6	□□□□□ -0.23
PTP4A2-204	ENST00000475464	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.6	□□□□□ -0.23
PTP4A2-204	ENST00000475464	UBR2	Q8IWV8	1755 aa		13.6	□□□□□ -0.23
PTP4A2-204	ENST00000475464	COL3A1	P02461	1466 aa	Predicted RBP	13.6	□□□□□ -0.23
PTP4A2-204	ENST00000475464	TIAM2	Q8IVF5	1701 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	ALDH1B1	P30837	517 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	DCTN1	Q14203	1278 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	OLFM4	Q6UX06	510 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	AIDA	Q96BJ3	306 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	HACL1	Q9UJ83	578 aa		13.59	□□□□□ -0.23
PTP4A2-204	ENST00000475464	KLRG2	A4D1S0	409 aa	Predicted RBP	13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	TMEM88B	A6NKF7	163 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NBPF26	B4DH59	902 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NBPF10	Q6P3W6	841 aa	Known RBP	13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	SYNE4	Q8N205	404 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NGEF	Q8N5V2	710 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NBPF15	Q8N660	670 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	PASK	Q96RG2	1323 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	ZNF541	Q9H0D2	1346 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	CNTNAP1	P78357	1384 aa		13.58	□□□□□ -0.24
PTP4A2-204	ENST00000475464	CCDC88A	Q3V6T2	1871 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	ANKRD31	Q8N7Z5	1873 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	FOXN1	O15353	648 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	EPHX2	P34913	555 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	IARS	P41252	1262 aa	Known RBP	13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	VEGFB	P49765	207 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	TAF7	Q15545	349 aa	Predicted RBP	13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	MIS18A	Q9NYP9	233 aa		13.57	□□□□□ -0.24
PTP4A2-204	ENST00000475464	SCN7A	Q01118	1682 aa		13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	SLX4	Q8IY92	1834 aa		13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	RGL2	O15211	777 aa		13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	HTATSF1	O43719	755 aa	Known RBP	13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	ITGBL1	O95965	494 aa	Predicted RBP	13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	HLF	Q16534	295 aa		13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	PNMA8A	Q86V59	439 aa	Predicted RBP	13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	JDP2	Q8WYK2	163 aa		13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	COL11A2	P13942	1736 aa	Predicted RBP	13.56	□□□□□ -0.24
PTP4A2-204	ENST00000475464	VIRMA	Q69YN4	1812 aa	Known RBP	13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	FER1L6	Q2WGJ9	1857 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	CTCF	P49711	727 aa	Predicted RBP	13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	MAP1S	Q66K74	1059 aa	Predicted RBP	13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	CNTROB	Q8N137	903 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NYX	Q9GZU5	481 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	PRDM10	Q9NQV6	1147 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	GJA3	Q9Y6H8	435 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	RNF123	Q5XPI4	1314 aa		13.55	□□□□□ -0.24
PTP4A2-204	ENST00000475464	FZD9	O00144	591 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NEFM	P07197	916 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	PPP2R1A	P30153	589 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	EIF6	P56537	245 aa	Known RBP	13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	DEFB115	Q30KQ5	88 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	NUTM1	Q86Y26	1132 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	GPC2	Q8N158	579 aa		13.54	□□□□□ -0.24
PTP4A2-204	ENST00000475464	KIF6	Q6ZMV9	814 aa		13.53	□□□□□ -0.24
PTP4A2-204	ENST00000475464	RPGR	Q92834	1020 aa	Known RBP	13.53	□□□□□ -0.24
PTP4A2-204	ENST00000475464	ABT1	Q9ULW3	272 aa	Known RBP	13.53	□□□□□ -0.24
PTP4A2-204	ENST00000475464	RRP7A	Q9Y3A4	280 aa	Known RBP	13.53	□□□□□ -0.24
PTP4A2-204	ENST00000475464	ERVV-1	B6SEH8	477 aa		13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	TCERG1	O14776	1098 aa	Known RBP	13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	LMOD1	P29536	600 aa	Predicted RBP	13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	CC2D2B	Q6DHV5	1058 aa		13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	PSMD1	Q99460	953 aa		13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	WBP1L	Q9NX94	342 aa		13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	DICER1	Q9UPY3	1922 aa	Known RBP	13.52	□□□□□ -0.25
PTP4A2-204	ENST00000475464	MYL6B	P14649	208 aa		13.51	□□□□□ -0.25
PTP4A2-204	ENST00000475464	GPT	P24298	496 aa		13.51	□□□□□ -0.25
PTP4A2-204	ENST00000475464	LBX1	P52954	281 aa		13.51	□□□□□ -0.25
PTP4A2-204	ENST00000475464	LARGE2	Q8N3Y3	721 aa		13.51	□□□□□ -0.25
PTP4A2-204	ENST00000475464	PNISR	Q8TF01	805 aa	Known RBP	13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 429.8 ms