RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 GRM8O00222 908 aa23.63■■□□□ 1.37
SMC4-209ENST00000468653 FAM161AQ3B820 660 aa23.63■■□□□ 1.37
SMC4-209ENST00000468653 ZNF330Q9Y3S2 320 aaPredicted RBP23.63■■□□□ 1.37
SMC4-209ENST00000468653 KCNQ2O43526 872 aa23.62■■□□□ 1.37
SMC4-209ENST00000468653 CYP19A1P11511 503 aaPredicted RBP23.62■■□□□ 1.37
SMC4-209ENST00000468653 THSD7AQ9UPZ6 1657 aa23.62■■□□□ 1.37
SMC4-209ENST00000468653 SMARCC1Q92922 1105 aaPredicted RBP23.61■■□□□ 1.37
SMC4-209ENST00000468653 IBTKQ9P2D0 1353 aaPredicted RBP23.61■■□□□ 1.37
SMC4-209ENST00000468653 GCKRQ14397 625 aa23.6■■□□□ 1.37
SMC4-209ENST00000468653 UTYO14607 1347 aa23.6■■□□□ 1.37
SMC4-209ENST00000468653 QTRT2Q9H974 415 aaKnown RBP23.6■■□□□ 1.37
SMC4-209ENST00000468653 PPP1R42Q7Z4L9 355 aa23.59■■□□□ 1.37
SMC4-209ENST00000468653 ZBTB3Q9H5J0 574 aa23.59■■□□□ 1.37
SMC4-209ENST00000468653 ARFGEF2Q9Y6D5 1785 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 LOC102724428A0A0B4J2F2 783 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 APBB1O00213 710 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 ATP6V1AP38606 617 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 SIK1P57059 783 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 PALLDQ8WX93 1383 aa23.58■■□□□ 1.37
SMC4-209ENST00000468653 ATP5J2-PTCD1G3V325 749 aa23.57■■□□□ 1.36
SMC4-209ENST00000468653 ONECUT3O60422 494 aaPredicted RBP23.57■■□□□ 1.36
SMC4-209ENST00000468653 KIF6Q6ZMV9 814 aa23.57■■□□□ 1.36
SMC4-209ENST00000468653 SSH3Q8TE77 659 aa23.57■■□□□ 1.36
SMC4-209ENST00000468653 SRGAP3O43295 1099 aa23.57■■□□□ 1.36
SMC4-209ENST00000468653 C8orf34Q49A92 452 aa23.56■■□□□ 1.36
SMC4-209ENST00000468653 SEPT12Q8IYM1 358 aa23.56■■□□□ 1.36
SMC4-209ENST00000468653 ARXQ96QS3 562 aa23.56■■□□□ 1.36
SMC4-209ENST00000468653 EXOC6BQ9Y2D4 811 aa23.56■■□□□ 1.36
SMC4-209ENST00000468653 POLA2Q14181 598 aa23.55■■□□□ 1.36
SMC4-209ENST00000468653 SUCLG2Q96I99 432 aa23.55■■□□□ 1.36
SMC4-209ENST00000468653 BCL11AQ9H165 835 aa23.55■■□□□ 1.36
SMC4-209ENST00000468653 TJP1Q07157 1748 aa23.55■■□□□ 1.36
SMC4-209ENST00000468653 NPM2Q86SE8 214 aaKnown RBP23.55■■□□□ 1.36
SMC4-209ENST00000468653 ZBTB1Q9Y2K1 713 aa23.55■■□□□ 1.36
SMC4-209ENST00000468653 MTX1Q13505 466 aa23.54■■□□□ 1.36
SMC4-209ENST00000468653 A0A087WZG4 1122 aa23.53■■□□□ 1.36
SMC4-209ENST00000468653 FAM182BQ5T319 152 aa23.53■■□□□ 1.36
SMC4-209ENST00000468653 SMARCA5O60264 1052 aaPredicted RBP23.52■■□□□ 1.36
SMC4-209ENST00000468653 CWC25Q9NXE8 425 aaPredicted RBP23.52■■□□□ 1.36
SMC4-209ENST00000468653 NUP188Q5SRE5 1749 aa23.52■■□□□ 1.36
SMC4-209ENST00000468653 IL6STP40189 918 aaPredicted RBP23.52■■□□□ 1.36
SMC4-209ENST00000468653 BICC1Q9H694 974 aaKnown RBP23.52■■□□□ 1.36
SMC4-209ENST00000468653 CCDC87Q9NVE4 849 aa23.52■■□□□ 1.36
SMC4-209ENST00000468653 AFDNP55196 1824 aaKnown RBP23.52■■□□□ 1.36
SMC4-209ENST00000468653 SURF6O75683 361 aaKnown RBP23.51■■□□□ 1.35
SMC4-209ENST00000468653 ITPK1Q13572 414 aa23.51■■□□□ 1.35
SMC4-209ENST00000468653 UBE3BQ7Z3V4 1068 aa23.51■■□□□ 1.35
SMC4-209ENST00000468653 CCDC191Q8NCU4 936 aa23.51■■□□□ 1.35
SMC4-209ENST00000468653 LRRCC1Q9C099 1032 aa23.51■■□□□ 1.35
SMC4-209ENST00000468653 MAP3K15Q6ZN16 1313 aa23.51■■□□□ 1.35
SMC4-209ENST00000468653 CRKLP46109 303 aaKnown RBP23.5■■□□□ 1.35
SMC4-209ENST00000468653 TCIRG1Q13488 830 aa23.5■■□□□ 1.35
SMC4-209ENST00000468653 KAZALD1Q96I82 304 aa23.5■■□□□ 1.35
SMC4-209ENST00000468653 RAB11FIP3O75154 756 aa23.5■■□□□ 1.35
SMC4-209ENST00000468653 INTS5Q6P9B9 1019 aaKnown RBP23.5■■□□□ 1.35
SMC4-209ENST00000468653 C16orf71Q8IYS4 520 aaPredicted RBP23.5■■□□□ 1.35
SMC4-209ENST00000468653 JARID2Q92833 1246 aaPredicted RBP23.5■■□□□ 1.35
SMC4-209ENST00000468653 PTF1AQ7RTS3 328 aa23.49■■□□□ 1.35
SMC4-209ENST00000468653 HSP90AB4PQ58FF6 505 aa23.48■■□□□ 1.35
SMC4-209ENST00000468653 PLEKHM2Q8IWE5 1019 aa23.48■■□□□ 1.35
SMC4-209ENST00000468653 H7C1W4 665 aa23.47■■□□□ 1.35
SMC4-209ENST00000468653 GIGYF2Q6Y7W6 1299 aaKnown RBP23.47■■□□□ 1.35
SMC4-209ENST00000468653 DZIP3Q86Y13 1208 aaKnown RBP23.47■■□□□ 1.35
SMC4-209ENST00000468653 ISCA1Q9BUE6 129 aa23.47■■□□□ 1.35
SMC4-209ENST00000468653 HSP90AB3PQ58FF7 597 aa23.46■■□□□ 1.35
SMC4-209ENST00000468653 COL15A1P39059 1388 aa23.46■■□□□ 1.35
SMC4-209ENST00000468653 NHSQ6T4R5 1651 aa23.46■■□□□ 1.35
SMC4-209ENST00000468653 EIF5P55010 431 aaKnown RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 CASP7P55210 303 aa23.45■■□□□ 1.34
SMC4-209ENST00000468653 TRIM28Q13263 835 aaKnown RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 OS9Q13438 667 aaPredicted RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 BMP2KLQ5H9B9 411 aa23.45■■□□□ 1.34
SMC4-209ENST00000468653 EPHA10Q5JZY3 1008 aa23.45■■□□□ 1.34
SMC4-209ENST00000468653 ZNF772Q68DY9 489 aaPredicted RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 TBC1D2BQ9UPU7 963 aa23.45■■□□□ 1.34
SMC4-209ENST00000468653 NOP58Q9Y2X3 529 aaKnown RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 CICQ96RK0 1608 aaPredicted RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 HLFQ16534 295 aa23.45■■□□□ 1.34
SMC4-209ENST00000468653 OTUD7AQ8TE49 926 aaPredicted RBP23.45■■□□□ 1.34
SMC4-209ENST00000468653 ERVV-1B6SEH8 477 aa23.44■■□□□ 1.34
SMC4-209ENST00000468653 KIF1BPQ96EK5 621 aa23.44■■□□□ 1.34
SMC4-209ENST00000468653 RTL5Q5HYW3 569 aaPredicted RBP23.43■■□□□ 1.34
SMC4-209ENST00000468653 BTAF1O14981 1849 aa23.43■■□□□ 1.34
SMC4-209ENST00000468653 RHPN1Q8TCX5 695 aa23.42■■□□□ 1.34
SMC4-209ENST00000468653 ZNF831Q5JPB2 1677 aa23.42■■□□□ 1.34
SMC4-209ENST00000468653 RABL6Q3YEC7 729 aaPredicted RBP23.42■■□□□ 1.34
SMC4-209ENST00000468653 PA2G4Q9UQ80 394 aaKnown RBP23.42■■□□□ 1.34
SMC4-209ENST00000468653 LINC00116Q8NCU8 138 aa23.41■■□□□ 1.34
SMC4-209ENST00000468653 IL1RAPL2Q9NP60 686 aa23.41■■□□□ 1.34
SMC4-209ENST00000468653 GPTP24298 496 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 KCNQ4P56696 695 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 KRT27Q7Z3Y8 459 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 ERC1Q8IUD2 1116 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 RREB1Q92766 1687 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 RBM6P78332 1123 aaKnown RBP23.4■■□□□ 1.34
SMC4-209ENST00000468653 G3BP1Q13283 466 aaKnown RBP eCLIP23.4■■□□□ 1.341e-39■■■■■ 140
SMC4-209ENST00000468653 TTC22Q5TAA0 569 aa23.4■■□□□ 1.34
SMC4-209ENST00000468653 LMBR1LQ6UX01 489 aa23.39■■□□□ 1.33
SMC4-209ENST00000468653 FAM196AQ6ZSG2 479 aa23.39■■□□□ 1.33
SMC4-209ENST00000468653 BCL11BQ9C0K0 894 aaPredicted RBP23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms