RNA–Protein interactions for RNA: ENST00000468476.1

PABPC4-209, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 2

Gene PABPC4, Length 3,592 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-209	ENST00000468476	CDC45	O75419	566 aa		10.85	□□□□□ -0.67
PABPC4-209	ENST00000468476	ADAMTS2	O95450	1211 aa		10.85	□□□□□ -0.67
PABPC4-209	ENST00000468476	PPP1R42	Q7Z4L9	355 aa		10.85	□□□□□ -0.67
PABPC4-209	ENST00000468476	ZNF526	Q8TF50	670 aa	Predicted RBP	10.85	□□□□□ -0.67
PABPC4-209	ENST00000468476	TAOK2	Q9UL54	1235 aa		10.85	□□□□□ -0.67
PABPC4-209	ENST00000468476	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	DNAAF4	Q8WXU2	420 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	ARHGAP23	Q9P227	1491 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	EIF4A1	P60842	406 aa	Known RBP	10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	AMOT	Q4VCS5	1084 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	PLEKHM2	Q8IWE5	1019 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	ZNF710	Q8N1W2	664 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	MYRIP	Q8NFW9	859 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	LRRCC1	Q9C099	1032 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	PA2G4	Q9UQ80	394 aa	Known RBP	10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	SPG7	Q9UQ90	795 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	ADGRB2	O60241	1585 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	NPHP3	Q7Z494	1330 aa		10.84	□□□□□ -0.67
PABPC4-209	ENST00000468476	TOMM22	Q9NS69	142 aa		10.83	□□□□□ -0.67
PABPC4-209	ENST00000468476	KIAA2012	Q0VF49	1180 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	RNF214	Q8ND24	703 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	BANK1	Q8NDB2	785 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	DCTPP1	Q9H773	170 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	ADGRL3	Q9HAR2	1447 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	SLIT1	O75093	1534 aa		10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	SETD1A	O15047	1707 aa	Known RBP	10.83	□□□□□ -0.68
PABPC4-209	ENST00000468476	SDS	P20132	328 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	KLHDC4	Q8TBB5	520 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	TNPO1	Q92973	898 aa	Known RBP	10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	MYD88	Q99836	296 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	KIAA0232	Q92628	1395 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	DTNB	O60941	627 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	GSPT1	P15170	499 aa	Known RBP	10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	HMGN5	P82970	282 aa	Known RBP	10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	NEXN	Q0ZGT2	675 aa		10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	CAVIN1	Q6NZI2	390 aa	Known RBP	10.82	□□□□□ -0.68
PABPC4-209	ENST00000468476	CRB1	P82279	1406 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	RTL1	A6NKG5	1358 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	HSP90B1	P14625	803 aa	Known RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	GTF2A1	P52655	376 aa	Predicted RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	COPS6	Q7L5N1	327 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	SLAIN2	Q9P270	581 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	DBF4	Q9UBU7	674 aa	Predicted RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	BMP2KL	Q5H9B9	411 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	XAGE3	Q8WTP9	111 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	USP44	Q9H0E7	712 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	CALCOCO1	Q9P1Z2	691 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	CCDC39	Q9UFE4	941 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	ANKAR	Q7Z5J8	1434 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	HTATSF1	O43719	755 aa	Known RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	ZNF496	Q96IT1	587 aa	Predicted RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	LARP6	Q9BRS8	491 aa	Known RBP	10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	BCL2L12	Q9HB09	334 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	USP16	Q9Y5T5	823 aa		10.81	□□□□□ -0.68
PABPC4-209	ENST00000468476	DDX58	O95786	925 aa	Known RBP	10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	CHAF1A	Q13111	956 aa	Predicted RBP	10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	IFNL2	Q8IZJ0	200 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	ZBTB3	Q9H5J0	574 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	TTC22	Q5TAA0	569 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	ERBB3	P21860	1342 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	CAPN2	P17655	700 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	SSH2	Q76I76	1423 aa		10.8	□□□□□ -0.68
PABPC4-209	ENST00000468476	ANKRD26	Q9UPS8	1709 aa		10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	IFIT2	P09913	472 aa	Known RBP	10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	MX1	P20591	662 aa		10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	PLCB2	Q00722	1185 aa		10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	ZNF790	Q6PG37	636 aa		10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	RSPH14	Q9UHP6	348 aa		10.79	□□□□□ -0.68
PABPC4-209	ENST00000468476	PDE1A	P54750	535 aa		10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	BRINP3	Q76B58	766 aa		10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	RBM25	P49756	843 aa	Known RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.78	□□□□□ -0.68	4e-7	■□□□□ 10.4
PABPC4-209	ENST00000468476	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	PEAK1	Q9H792	1746 aa		10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	GIGYF1	O75420	1035 aa	Predicted RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	BRPF1	P55201	1214 aa	Predicted RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	ATP8B2	P98198	1209 aa		10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	LARP1	Q6PKG0	1096 aa	Known RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	UPF3B	Q9BZI7	483 aa	Known RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.78	□□□□□ -0.68
PABPC4-209	ENST00000468476	C1orf167	Q5SNV9	1468 aa		10.77	□□□□□ -0.68
PABPC4-209	ENST00000468476	KDR	P35968	1356 aa		10.77	□□□□□ -0.68
PABPC4-209	ENST00000468476	CWC27	Q6UX04	472 aa	Known RBP	10.77	□□□□□ -0.68
PABPC4-209	ENST00000468476	UBE3B	Q7Z3V4	1068 aa		10.77	□□□□□ -0.68
PABPC4-209	ENST00000468476	MON2	Q7Z3U7	1717 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	HS1BP3	Q53T59	392 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	AACS	Q86V21	672 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	PSEN1	P49768	467 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	NEK4	P51957	841 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	NEUROD6	Q96NK8	337 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	RBSN	Q9H1K0	784 aa		10.77	□□□□□ -0.69
PABPC4-209	ENST00000468476	DLG5	Q8TDM6	1919 aa		10.76	□□□□□ -0.69
PABPC4-209	ENST00000468476	A1BG	P04217	495 aa		10.76	□□□□□ -0.69
PABPC4-209	ENST00000468476	CLASRP	Q8N2M8	674 aa	Known RBP	10.76	□□□□□ -0.69
PABPC4-209	ENST00000468476	ZCRB1	Q8TBF4	217 aa	Known RBP	10.76	□□□□□ -0.69
PABPC4-209	ENST00000468476	CNKSR2	Q8WXI2	1034 aa		10.76	□□□□□ -0.69
PABPC4-209	ENST00000468476	PRIMPOL	Q96LW4	560 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms