RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 NAPBQ9H115 298 aa10.13□□□□□ -0.79
HPS4-209ENST00000466781 PABPN1LA6NDY0 278 aaKnown RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 U3KPZ7 1027 aaPredicted RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 ADGBQ8N7X0 1667 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 BAG4O95429 457 aaKnown RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 MAP3K12Q12852 859 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 GRIPAP1Q4V328 841 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 CTCFLQ8NI51 663 aaPredicted RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 HOMER2Q9NSB8 354 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 RPRD2Q5VT52 1461 aaKnown RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 DUSP27Q5VZP5 1158 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 IL1RAPL2Q9NP60 686 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 ANKRD36BQ8N2N9 1353 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 CASTP20810 708 aaKnown RBP10.12□□□□□ -0.79
HPS4-209ENST00000466781 CACNA2D4Q7Z3S7 1137 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 SAMD9Q5K651 1589 aa10.12□□□□□ -0.79
HPS4-209ENST00000466781 CCDC196A0A1B0GTZ2 297 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 C11orf95C9JLR9 678 aaPredicted RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 LARP1Q6PKG0 1096 aaKnown RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 ATF7IPQ6VMQ6 1270 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 TAF3Q5VWG9 929 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 NUTM1Q86Y26 1132 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 DHX37Q8IY37 1157 aaKnown RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 FEZ1Q99689 392 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 MVPQ14764 893 aaKnown RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 ARHGAP29Q52LW3 1261 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 DYDC1Q8WWB3 177 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 SMARCC1Q92922 1105 aaPredicted RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 DDX11Q96FC9 970 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 RANBP6O60518 1105 aaKnown RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 POLD1P28340 1107 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 MAP2K1Q02750 393 aaPredicted RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 CCDC178Q5BJE1 867 aa10.11□□□□□ -0.79
HPS4-209ENST00000466781 CTNNBL1Q8WYA6 563 aaPredicted RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 TRMT112Q9UI30 125 aaKnown RBP10.11□□□□□ -0.79
HPS4-209ENST00000466781 DISP3Q9P2K9 1392 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 RAB11FIP3O75154 756 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 KIF20AO95235 890 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 PDIA4P13667 645 aaKnown RBP10.1□□□□□ -0.79
HPS4-209ENST00000466781 KCNA6P17658 529 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 ATP6V1AP38606 617 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 IFIT5Q13325 482 aaKnown RBP10.1□□□□□ -0.79
HPS4-209ENST00000466781 IQCA1Q86XH1 822 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 ZNF622Q969S3 477 aaKnown RBP eCLIP10.1□□□□□ -0.792e-6■□□□□ 11.1
HPS4-209ENST00000466781 NPATQ14207 1427 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 CABLES1Q8TDN4 633 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 ANKRD18BA2A2Z9 1011 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 CCDC113Q9H0I3 377 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 CFAP100Q494V2 611 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 CCDC102AQ96A19 550 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 HYPKQ9NX55 129 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 CTNNA2P26232 953 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 SSRP1Q08945 709 aaKnown RBP10.1□□□□□ -0.79
HPS4-209ENST00000466781 HOOK3Q86VS8 718 aa10.1□□□□□ -0.79
HPS4-209ENST00000466781 GOPCQ9HD26 462 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 MYO1BO43795 1136 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 IL2RBP14784 551 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 NF2P35240 595 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 PPP1R42Q7Z4L9 355 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 KIF1BPQ96EK5 621 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 RNF41Q9H4P4 317 aaPredicted RBP10.09□□□□□ -0.79
HPS4-209ENST00000466781 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 TBX22Q9Y458 520 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 SLC12A7Q9Y666 1083 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 GSTTP1A0A1W2PQM5 241 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 C6orf229H3BNL8 230 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 NLRP5P59047 1200 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 GOLGA6L10A0A0M3HER8 536 aa10.09□□□□□ -0.79
HPS4-209ENST00000466781 SMARCA5O60264 1052 aaPredicted RBP10.08□□□□□ -0.8
HPS4-209ENST00000466781 GCOM1H8Y6P7 765 aaPredicted RBP10.08□□□□□ -0.8
HPS4-209ENST00000466781 MYZAPP0CAP1 466 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 GIGYF2Q6Y7W6 1299 aaKnown RBP10.08□□□□□ -0.8
HPS4-209ENST00000466781 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.08□□□□□ -0.8
HPS4-209ENST00000466781 CCDC194A0A1B0GVG4 234 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 HLA-DOAP06340 250 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 CETN1Q12798 172 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 CATIPQ7Z7H3 387 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 RPAP2Q8IXW5 612 aaPredicted RBP10.08□□□□□ -0.8
HPS4-209ENST00000466781 STXBP4Q6ZWJ1 553 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 CCDC12Q8WUD4 166 aaPredicted RBP10.08□□□□□ -0.8
HPS4-209ENST00000466781 TMEM57Q8N5G2 664 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 PSMD1Q99460 953 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 FERMT1Q9BQL6 677 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.08□□□□□ -0.8
HPS4-209ENST00000466781 SSX2IPQ9Y2D8 614 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 MAPKBP1O60336 1514 aa10.08□□□□□ -0.8
HPS4-209ENST00000466781 MAP3K11Q16584 847 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 ABCC11Q96J66 1382 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 MACROD2A1Z1Q3 448 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 ZNF213O14771 459 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 CASQ1P31415 396 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 KLHL10Q6JEL2 608 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 DDX46Q7L014 1031 aaKnown RBP10.07□□□□□ -0.8
HPS4-209ENST00000466781 BTG4Q9NY30 223 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 GOLGA8AA7E2F4 631 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 GOLGA8BA8MQT2 603 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 F6X3S4 739 aa10.07□□□□□ -0.8
HPS4-209ENST00000466781 GLRX3O76003 335 aaKnown RBP10.07□□□□□ -0.8
HPS4-209ENST00000466781 HMGB1P09429 215 aaKnown RBP10.07□□□□□ -0.8
HPS4-209ENST00000466781 CALML4Q96GE6 196 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms